ATTED-II : GeneCoexpression result

Species	Gene	Description
mtr-u.5	11424498	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
mtr-r.5	11424498	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
mtr-m.5	11424498	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
gma-u.5	100815794	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
gma-u.5	100810556	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
ppo-u.5	18096373	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
ppo-u.5	7494144	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
ath-u.5	WTF1	Ubiquitin carboxyl-terminal hydrolase family protein
vvi-u.5	100248200	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
sly-u.5	101244535	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic
osa-u.5	4339664	protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like
zma-u.5	100277394	what's this factor1

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003723 [list] [network] RNA binding

(1400 genes)

IEA

Protein

XP_003626564.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, chlo_mito 5

(predict for XP_003626564.1)

Subcellular
localization
TargetP

chlo 8

(predict for XP_003626564.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	mtr-u.5 for 11424498	mtr-r.5 for 11424498	mtr-m.5 for 11424498	gma-u.5 for 100815794	gma-u.5 for 100810556	ppo-u.5 for 18096373	ppo-u.5 for 7494144	ath-u.5 for WTF1	vvi-u.5 for 100248200	sly-u.5 for 101244535	osa-u.5 for 4339664	zma-u.5 for 100277394

Ortholog

Ortholog ID: 9902

Species

mtr

gma

ppo

ath

bra

vvi

ghi

bna

cit

sly

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

WTF1

Function^*

protein WHAT'S THIS FACTOR 1 homolog, chloroplastic

Ubiquitin carboxyl-terminal hydrolase family protein

protein WHAT'S THIS FACTOR 1 homolog, chloroplastic

protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like

protein WHAT'S THIS FACTOR 1 homolog, chloroplastic

protein WHAT'S THIS FACTOR 1 homolog, chloroplastic-like

what's this factor1

protein WHAT'S THIS FACTOR 1 homolog, chloroplastic

protein ROOT PRIMORDIUM DEFECTIVE 1

protein WHAT'S THIS FACTOR 1 homolog

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	2
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00230	Purine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00230	Purine metabolism	3
bna00270	Cysteine and methionine metabolism	2
bna01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00730	Thiamine metabolism	2
hvu01240	Biosynthesis of cofactors	2

Expression

Expression pattern

Entrez Gene ID^*

11424498

100810556

100815794

7494144

18096373

6240517

103836865

100248200

107952946

107954498

106365735

106365639

127901018

102615771

101244535

107793802

107760322

4339664

100277394

123147309

123069067

123451077

8074619

100834907

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 11424498 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11424498 (mtr-u.5 coexpression data)


Species	mtr	gma	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	3	2	2	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 11424498 (mtr-u.5 coexpression data)

Top 50 enrichment test to 11424498 (mtr-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**