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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100280492   CDT1a protein 
 zma-r.6   100280492   CDT1a protein 
 zma-m.5   100280492   CDT1a protein 
 zma-u.5   100274350   CDT1a protein 
 zma-u.5   100383008   CDT1-like protein a chloroplastic 
 osa-u.5   4348970   CDT1-like protein b 
 gma-u.5   102670055   CDT1-like protein b 
 gma-u.5   100794715   CDT1-like protein a, chloroplastic 
 sly-u.5   101254874   CDT1-like protein a, chloroplastic 
 vvi-u.5   100244348   CDT1-like protein a, chloroplastic 
 ppo-u.5   7494374   CDT1-like protein a, chloroplastic 
 mtr-u.5   11422247   CDT1-like protein a, chloroplastic 

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Top 50 coexpressed genes to 100280492 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100280492 (zma-u.5 coexpression data)

CoexMap"100280492"


zmaLOC100280492 | Entrez gene ID : 100280492      
Species zma osa gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot tae ath bna ghi
Paralog 5 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030174 [list] [network] regulation of DNA-templated DNA replication initiation  (6 genes)  IEA  
GO:0071163 [list] [network] DNA replication preinitiation complex assembly  (6 genes)  IEA  
GO:0000076 [list] [network] DNA replication checkpoint signaling  (17 genes)  IEA  
GO:0000278 [list] [network] mitotic cell cycle  (175 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3371 genes)  IEA  
GO MF
GO:0070182 [list] [network] DNA polymerase binding  (15 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2288 genes)  IEA  
Protein NP_001146884.2 [sequence] [blastp]
NP_001394719.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 4,  chlo 1,  vacu 1,  pero 1  (predict for NP_001146884.2)
nucl 4,  cyto 4,  chlo 1,  vacu 1,  pero 1  (predict for NP_001394719.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for NP_001146884.2)
other 8,  chlo 3  (predict for NP_001394719.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100280492

.
zma-r.6
for
100280492

.
zma-m.5
for
100280492

.
zma-u.5
for
100274350

.
zma-u.5
for
100383008

.
osa-u.5
for
4348970

.
gma-u.5
for
102670055

.
gma-u.5
for
100794715

.
sly-u.5
for
101254874

.
vvi-u.5
for
100244348

.
ppo-u.5
for
7494374

.
mtr-u.5
for
11422247

.


Ortholog ID: 11843
Species gma gma sly osa zma vvi ppo mtr tae tae hvu sbi sbi sot bdi nta nta
Symbol LOC100794715 LOC102670055 LOC101254874 LOC4348970 LOC100383008 LOC100244348 LOC7494374 LOC11422247 LOC123122575 LOC123047077 LOC123432511 LOC8067113 LOC8079590 LOC102579973 LOC100827903 LOC107776001 LOC107829689
Function* CDT1-like protein a, chloroplastic CDT1-like protein b CDT1-like protein a, chloroplastic CDT1-like protein b CDT1-like protein a chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein b CDT1-like protein b CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic CDT1-like protein a, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 4
gma00240 Pyrimidine metabolism 3
gma01232 Nucleotide metabolism 3
gma03030 DNA replication 3
gma03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 7
gma03430 Mismatch repair 5
gma03410 Base excision repair 4
gma03420 Nucleotide excision repair 4
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 3
vvi03440 Homologous recombination 3
vvi03420 Nucleotide excision repair 2
vvi03430 Mismatch repair 2
vvi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
nta00240 Pyrimidine metabolism 2
nta00480 Glutathione metabolism 2
nta01232 Nucleotide metabolism 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
nta00240 Pyrimidine metabolism 2
nta00480 Glutathione metabolism 2
nta01232 Nucleotide metabolism 2
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100794715 102670055 101254874 4348970 100383008 100244348 7494374 11422247 123122575 123047077 123432511 8067113 8079590 102579973 100827903 107776001 107829689
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