ATTED-II : GeneCoexpression result

Species	Gene	Description
zma-u.5	100283612	uncharacterized LOC100283612
zma-r.6	100283612	uncharacterized LOC100283612
zma-m.5	100283612	uncharacterized LOC100283612
zma-u.5	100283480	snRK1-interacting protein 1
osa-u.5	4325084	DNA repair RAD52-like protein 1, mitochondrial
ath-u.5	RAD52-1	cobalt ion binding protein
gma-u.5	100782719	DNA repair RAD52-like protein 1, mitochondrial
sly-u.5	101261638	DNA repair RAD52-like protein 1, mitochondrial
vvi-u.5	100261996	DNA repair RAD52-like protein 1, mitochondrial
ppo-u.5	18108409	DNA repair RAD52-like protein 1, mitochondrial
mtr-u.5	11421459	DNA repair RAD52-like protein 1, mitochondrial

functional annotation

KEGG

GO BP

GO:0000724 [list] [network] double-strand break repair via homologous recombination

(84 genes)

IEA

GO CC

GO MF

GO:0003677 [list] [network] DNA binding

(2288 genes)

IEA

Protein

NP_001149985.1 [sequence] [blastp]
NP_001399492.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 5, chlo 4	(predict for NP_001149985.1)
chlo 9, mito 1	(predict for NP_001399492.1)

Subcellular
localization
TargetP

mito 9	(predict for NP_001149985.1)
mito 9	(predict for NP_001399492.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100283612	zma-r.6 for 100283612	zma-m.5 for 100283612	zma-u.5 for 100283480	osa-u.5 for 4325084	ath-u.5 for RAD52-1	gma-u.5 for 100782719	sly-u.5 for 101261638	vvi-u.5 for 100261996	ppo-u.5 for 18108409	mtr-u.5 for 11421459

Ortholog ID: 11121

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

RAD52-1

Function^*

snRK1-interacting protein 1

uncharacterized LOC100283612

DNA repair RAD52-like protein 1, mitochondrial

cobalt ion binding protein

DNA repair RAD52-like protein 1, mitochondrial

uncharacterized LOC102601709

DNA repair RAD52-like protein 1, mitochondrial

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	4
zma03013	Nucleocytoplasmic transport	3
zma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	3
zma03083	Polycomb repressive complex	2
zma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	3
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00290	Valine, leucine and isoleucine biosynthesis	3
tae00770	Pantothenate and CoA biosynthesis	3
tae01210	2-Oxocarboxylic acid metabolism	3
tae01230	Biosynthesis of amino acids	3
tae03022	Basal transcription factors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5
tae00290	Valine, leucine and isoleucine biosynthesis	3
tae00770	Pantothenate and CoA biosynthesis	3
tae01210	2-Oxocarboxylic acid metabolism	3
tae01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03030	DNA replication	2
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	3
gma00010	Glycolysis / Gluconeogenesis	2
gma01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5
sly03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	7
ghi00300	Lysine biosynthesis	2
ghi00470	D-Amino acid metabolism	2
ghi01230	Biosynthesis of amino acids	2
ghi00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	7
ghi03015	mRNA surveillance pathway	2
ghi00300	Lysine biosynthesis	2
ghi00470	D-Amino acid metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	5
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00195	Photosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04626	Plant-pathogen interaction	4
nta00230	Purine metabolism	3
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00230	Purine metabolism	4
nta04626	Plant-pathogen interaction	2
nta00030	Pentose phosphate pathway	2
nta01200	Carbon metabolism	2
nta01230	Biosynthesis of amino acids	2

Expression

Expression pattern

Entrez Gene ID^*

100283480

100283612

110433921

4325084

123062795

123079958

123440442

100842020

843472

100782719

101261638

103830856

100261996

18108409

11421459

107910636

107951102

106400637

106352261

102601709

102615229

107785332

107830657

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100283612 (zma-u.5 coexpression data)

Top 50 enrichment test to 100283612 (zma-u.5 coexpression data)


Species	zma	osa	ath	gma	sly	vvi	ppo	mtr	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100283612 (zma-u.5 coexpression data)

Top 50 enrichment test to 100283612 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**