ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	100305711	putative disulfide-isomerase LQY1
gma-r.7	100305711	putative disulfide-isomerase LQY1
gma-m.5	100305711	putative disulfide-isomerase LQY1
gma-u.5	100815666	protein disulfide-isomerase LQY1, chloroplastic
mtr-u.5	11416394	protein SPA, chloroplastic
ppo-u.5	7493957	protein SPA, chloroplastic
ppo-u.5	7479685	protein SPA, chloroplastic
ath-u.5	LQY1	DnaJ/Hsp40 cysteine-rich domain superfamily protein
bra-r.6	103852971	protein disulfide-isomerase LQY1, chloroplastic
bra-r.6	103832015	protein disulfide-isomerase LQY1, chloroplastic
vvi-u.5	100267764	protein disulfide-isomerase LQY1, chloroplastic
ghi-r.1	107938109	protein SPA, chloroplastic
ghi-r.1	107940713	protein SPA, chloroplastic
bna-r.1	106390977	protein disulfide-isomerase LQY1, chloroplastic-like
bna-r.1	106397334	protein disulfide-isomerase LQY1, chloroplastic
bna-r.1	106402518	protein disulfide-isomerase LQY1, chloroplastic
cit-r.1	102625052	protein disulfide-isomerase LQY1, chloroplastic
sly-u.5	SPA	protein SPA
sot-r.1	102593418	protein SPA, chloroplastic
nta-r.1	107794418	protein SPA, chloroplastic
osa-u.5	4332227	protein SPA, chloroplastic
zma-u.5	100278360	uncharacterized LOC100278360
tae-r.2	123098048	protein SPA, chloroplastic
tae-r.2	123092754	protein SPA, chloroplastic
hvu-r.1	123449146	protein SPA, chloroplastic
sbi-r.1	8073411	protein SPA, chloroplastic
bdi-r.1	100837113	protein SPA, chloroplastic

Annotation

functional annotation

KEGG

GO BP

GO:0010206 [list] [network] photosystem II repair

(8 genes)

IEA

GO CC

GO:0009507 [list] [network] chloroplast

(1168 genes)

IEA

GO MF

GO:0003756 [list] [network] protein disulfide isomerase activity

(28 genes)

IEA

Protein

NP_001235634.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9

(predict for NP_001235634.1)

Subcellular
localization
TargetP

chlo 8

(predict for NP_001235634.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100305711	gma-r.7 for 100305711	gma-m.5 for 100305711	gma-u.5 for 100815666	mtr-u.5 for 11416394	ppo-u.5 for 7493957	ppo-u.5 for 7479685	ath-u.5 for LQY1	bra-r.6 for 103852971	bra-r.6 for 103832015	vvi-u.5 for 100267764	ghi-r.1 for 107938109	ghi-r.1 for 107940713	bna-r.1 for 106390977	bna-r.1 for 106397334	bna-r.1 for 106402518	cit-r.1 for 102625052	sly-u.5 for SPA	sot-r.1 for 102593418	nta-r.1 for 107794418	osa-u.5 for 4332227	zma-u.5 for 100278360	tae-r.2 for 123098048	tae-r.2 for 123092754	hvu-r.1 for 123449146	sbi-r.1 for 8073411	bdi-r.1 for 100837113

Ortholog

Ortholog ID: 9881

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

LQY1

SPA

Function^*

putative disulfide-isomerase LQY1

protein disulfide-isomerase LQY1, chloroplastic

protein SPA, chloroplastic

DnaJ/Hsp40 cysteine-rich domain superfamily protein

protein disulfide-isomerase LQY1, chloroplastic

protein SPA, chloroplastic

protein disulfide-isomerase LQY1, chloroplastic-like

protein disulfide-isomerase LQY1, chloroplastic

protein SPA

protein SPA, chloroplastic

uncharacterized LOC100278360

protein SPA, chloroplastic

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00195	Photosynthesis	4
gma00710	Carbon fixation by Calvin cycle	3
gma01200	Carbon metabolism	3
gma00906	Carotenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00860	Porphyrin metabolism	7
gma00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01200	Carbon metabolism	5
mtr00010	Glycolysis / Gluconeogenesis	4
mtr00710	Carbon fixation by Calvin cycle	4
mtr01230	Biosynthesis of amino acids	4
mtr00030	Pentose phosphate pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00195	Photosynthesis	4
ppo00710	Carbon fixation by Calvin cycle	3
ppo01200	Carbon metabolism	3
ppo00196	Photosynthesis - antenna proteins	3
ppo00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00195	Photosynthesis	11
ath00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00195	Photosynthesis	4
bra00196	Photosynthesis - antenna proteins	2
bra00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	7
vvi00710	Carbon fixation by Calvin cycle	6
vvi00195	Photosynthesis	3
vvi00010	Glycolysis / Gluconeogenesis	2
vvi00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00195	Photosynthesis	5
ghi00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00195	Photosynthesis	6
ghi00860	Porphyrin metabolism	2
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04081	Hormone signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04081	Hormone signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04081	Hormone signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00195	Photosynthesis	9
cit00010	Glycolysis / Gluconeogenesis	2
cit00710	Carbon fixation by Calvin cycle	2
cit01200	Carbon metabolism	2
cit00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	12
sly00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01200	Carbon metabolism	4
sot01230	Biosynthesis of amino acids	3
sot00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
sot01240	Biosynthesis of cofactors	2
sot00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00710	Carbon fixation by Calvin cycle	5
zma01200	Carbon metabolism	5
zma00010	Glycolysis / Gluconeogenesis	2
zma00030	Pentose phosphate pathway	2
zma00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	3
tae00740	Riboflavin metabolism	3
tae00790	Folate biosynthesis	3
tae01240	Biosynthesis of cofactors	3
tae00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00630	Glyoxylate and dicarboxylate metabolism	7
tae01200	Carbon metabolism	7
tae00710	Carbon fixation by Calvin cycle	4
tae00260	Glycine, serine and threonine metabolism	3
tae00670	One carbon pool by folate	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00195	Photosynthesis	6
sbi00196	Photosynthesis - antenna proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	6
bdi00630	Glyoxylate and dicarboxylate metabolism	5
bdi00710	Carbon fixation by Calvin cycle	5

Expression

Expression pattern

Entrez Gene ID^*

100305711

100815666

11416394

7493957

7479685

843903

103852971

103832015

100267764

107938109

107940713

106390977

106397334

106421691

102625052

101259741

102593418

107794418

4332227

100278360

123098048

123092754

123449146

8073411

100837113

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100305711 (gma-u.5 coexpression data)

Top 50 enrichment test to 100305711 (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	1	2	1	2	1	2	3	1	1	1	1	1	1	2	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100305711 (gma-u.5 coexpression data)

Top 50 enrichment test to 100305711 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**