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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100383372   Poly(A)-specific ribonuclease PARN 
 zma-r.6   100383372   Poly(A)-specific ribonuclease PARN 
 zma-m.5   100383372   Poly(A)-specific ribonuclease PARN 
 sbi-r.1   8073560   poly(A)-specific ribonuclease PARN 
 osa-u.5   9268289   poly(A)-specific ribonuclease PARN 
 tae-r.2   123189466   poly(A)-specific ribonuclease PARN 
 tae-r.2   123053584   poly(A)-specific ribonuclease PARN 
 tae-r.2   123045712   poly(A)-specific ribonuclease PARN 
 hvu-r.1   123426963   poly(A)-specific ribonuclease PARN 
 bdi-r.1   100828356   poly(A)-specific ribonuclease PARN 
 ath-u.5   AHG2   Polynucleotidyl transferase, ribonuclease H-like superfamily protein 
 gma-u.5   100808217   poly(A)-specific ribonuclease PARN 
 gma-u.5   100784997   poly(A)-specific ribonuclease PARN 
 sly-u.5   101250035   poly(A)-specific ribonuclease PARN 
 bra-r.6   103871015   poly(A)-specific ribonuclease PARN 
 vvi-u.5   100258377   poly(A)-specific ribonuclease PARN 
 ppo-u.5   7487549   poly(A)-specific ribonuclease PARN 
 ppo-u.5   7497342   poly(A)-specific ribonuclease PARN-like 
 mtr-u.5   25490728   poly(A)-specific ribonuclease PARN 
 ghi-r.1   107952988   poly(A)-specific ribonuclease PARN 
 ghi-r.1   107922431   poly(A)-specific ribonuclease PARN 
 bna-r.1   106415384   poly(A)-specific ribonuclease PARN 
 bna-r.1   125610054   poly(A)-specific ribonuclease PARN-like 
 sot-r.1   107060326   poly(A)-specific ribonuclease PARN-like 
 sot-r.1   102581626   poly(A)-specific ribonuclease PARN 
 cit-r.1   102630341   poly(A)-specific ribonuclease PARN 
 nta-r.1   107804188   poly(A)-specific ribonuclease PARN-like 
 nta-r.1   107767706   poly(A)-specific ribonuclease PARN 
 cre-r.1   CHLRE_02g090276v5   uncharacterized protein 
 cre-r.1   CHLRE_02g095071v5   uncharacterized protein 

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Top 50 coexpressed genes to 100383372 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100383372 (zma-u.5 coexpression data)

CoexMap"100383372"


zmaLOC100383372 | Entrez gene ID : 100383372      
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 1 1 3 1 1 1 2 1 1 1 2 1 2 2 2 1 2 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma03018 [list] [network] RNA degradation (140 genes)
GO BP
GO CC
GO MF
GO:0000175 [list] [network] 3'-5'-RNA exonuclease activity  (48 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1549 genes)  IEA  
Protein NP_001169499.1 [sequence] [blastp]
XP_035819044.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  nucl 1,  mito 1,  cysk 1,  cyto_nucl 1,  nucl_plas 1  (predict for NP_001169499.1)
chlo 6,  mito 1,  nucl 1,  cyto_mito 1  (predict for XP_035819044.1)
Subcellular
localization
TargetP
mito 8  (predict for NP_001169499.1)
mito 8  (predict for XP_035819044.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100383372
zma-r.6
for
100383372
zma-m.5
for
100383372
sbi-r.1
for
8073560
osa-u.5
for
9268289
tae-r.2
for
123189466
tae-r.2
for
123053584
tae-r.2
for
123045712
hvu-r.1
for
123426963
bdi-r.1
for
100828356
ath-u.5
for
AHG2
gma-u.5
for
100808217
gma-u.5
for
100784997
sly-u.5
for
101250035
bra-r.6
for
103871015
vvi-u.5
for
100258377
ppo-u.5
for
7487549
ppo-u.5
for
7497342
mtr-u.5
for
25490728
ghi-r.1
for
107952988
ghi-r.1
for
107922431
bna-r.1
for
106415384
bna-r.1
for
125610054
sot-r.1
for
107060326
sot-r.1
for
102581626
cit-r.1
for
102630341
nta-r.1
for
107804188
nta-r.1
for
107767706
cre-r.1
for
CHLRE_02g090276v5
cre-r.1
for
CHLRE_02g095071v5


Ortholog ID: 8745
Species zma sbi osa tae tae tae hvu bdi ath gma gma sly bra vvi ppo ppo mtr ghi ghi bna bna sot sot cit nta nta cre cre
Symbol LOC100383372 LOC8073560 LOC9268289 LOC123189466 LOC123053584 LOC123045712 LOC123426963 LOC100828356 AHG2 LOC100808217 LOC100784997 LOC101250035 LOC103871015 LOC100258377 LOC7487549 LOC7497342 LOC25490728 LOC107952988 LOC107922431 LOC106415384 LOC125610054 LOC107060326 LOC102581626 LOC102630341 LOC107804188 LOC107767706 CHLRE_02g090276v5 CHLRE_02g095071v5
Function* Poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN Polynucleotidyl transferase, ribonuclease H-like superfamily protein poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN poly(A)-specific ribonuclease PARN-like poly(A)-specific ribonuclease PARN uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 12
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00562 Inositol phosphate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 7
ghi03015 mRNA surveillance pathway 7
ghi03040 Spliceosome 7
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 4
ghi03040 Spliceosome 4
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03060 Protein export 2
bna03020 RNA polymerase 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03020 RNA polymerase 3
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 3
nta03040 Spliceosome 2
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100383372 8073560 9268289 123189466 123053584 123045712 123426963 100828356 842037 100808217 100784997 101250035 103871015 100258377 7487549 7497342 25490728 107952988 107922431 106415384 125610054 107060326 102581626 102630341 107804188 107767706 5727468 66052361
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