ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100499664	proteasome beta subunit C1
gma-r.7	100499664	proteasome beta subunit C1
gma-m.5	100499664	proteasome beta subunit C1
gma-u.5	100527027	20S proteasome beta subunit C1
gma-u.5	100306084	putative proteasome beta subunit C1
mtr-u.5	11417396	proteasome subunit beta type-3-A
mtr-u.5	11445740	proteasome subunit beta type-3-A
ppo-u.5	7460968	proteasome subunit beta type-3-A
ppo-u.5	7460354	proteasome subunit beta type-3-A
ath-u.5	PBC1	proteasome beta subunit C1
ath-u.5	PBC2	20S proteasome beta subunit C2
vvi-u.5	100250625	proteasome subunit beta type-like
sly-u.5	101259528	proteasome subunit beta type-3-A
osa-u.5	4328517	proteasome subunit beta type-3-like
osa-u.5	4341637	proteasome subunit beta type-3-like
zma-u.5	100382784	uncharacterized LOC100382784
zma-u.5	100274112	uncharacterized LOC100274112
zma-u.5	100272320	Proteasome subunit beta type

Top 50 coexpressed genes to 100499664 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100499664 (gma-u.5 coexpression data)

CoexMap"100499664"

[Cytoscape]

Annotation

functional annotation

KEGG

gmx03050 [list] [network] Proteasome (106 genes)

GO BP

GO:0043161 [list] [network] proteasome-mediated ubiquitin-dependent protein catabolic process

(267 genes)

IEA

GO CC

GO:0019774 [list] [network] proteasome core complex, beta-subunit complex	(7 genes)	IEA
GO:0005839 [list] [network] proteasome core complex	(39 genes)	IEA

GO MF

Protein

NP_001237990.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, chlo 4

(predict for NP_001237990.1)

Subcellular
localization
TargetP

scret 6, other 4

(predict for NP_001237990.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100499664	gma-r.7 for 100499664	gma-m.5 for 100499664	gma-u.5 for 100527027	gma-u.5 for 100306084	mtr-u.5 for 11417396	mtr-u.5 for 11445740	ppo-u.5 for 7460968	ppo-u.5 for 7460354	ath-u.5 for PBC1	ath-u.5 for PBC2	vvi-u.5 for 100250625	sly-u.5 for 101259528	osa-u.5 for 4328517	osa-u.5 for 4341637	zma-u.5 for 100382784	zma-u.5 for 100274112	zma-u.5 for 100272320

Ortholog

Ortholog ID: 3164

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

PBC2

PBC1

Function^*

putative proteasome beta subunit C1

20S proteasome beta subunit C1

proteasome subunit beta type-3-A

20S proteasome beta subunit C2

proteasome beta subunit C1

proteasome subunit beta type-3-A

proteasome subunit beta type-like

proteasome subunit beta type-3-A

proteasome subunit beta type-3-A-like

proteasome subunit beta type-3-A

proteasome subunit beta type-3-A-like

proteasome subunit beta type-3-like

uncharacterized LOC100382784

Proteasome subunit beta type

proteasome subunit beta type-3

proteasome subunit beta type-3-like

proteasome subunit beta type-3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	9
gma00190	Oxidative phosphorylation	3
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	10
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	6
ppo03015	mRNA surveillance pathway	3
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03050	Proteasome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03050	Proteasome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	15
vvi03420	Nucleotide excision repair	2
vvi04120	Ubiquitin mediated proteolysis	2
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	10
ghi03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	18
ghi00030	Pentose phosphate pathway	2
ghi00710	Carbon fixation by Calvin cycle	2
ghi01200	Carbon metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	9
bna03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	7
bna03020	RNA polymerase	3
bna03420	Nucleotide excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03050	Proteasome	14
cit03040	Spliceosome	2
cit00510	N-Glycan biosynthesis	2
cit00513	Various types of N-glycan biosynthesis	2
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03050	Proteasome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	10
nta04120	Ubiquitin mediated proteolysis	2
nta00020	Citrate cycle (TCA cycle)	2
nta00270	Cysteine and methionine metabolism	2
nta00566	Sulfoquinovose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	10
nta04120	Ubiquitin mediated proteolysis	2
nta00190	Oxidative phosphorylation	2
nta00020	Citrate cycle (TCA cycle)	2
nta00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	13
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03050	Proteasome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	4
tae03420	Nucleotide excision repair	2
tae04141	Protein processing in endoplasmic reticulum	2
tae00520	Amino sugar and nucleotide sugar metabolism	2
tae01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	3
hvu04130	SNARE interactions in vesicular transport	2
hvu03420	Nucleotide excision repair	2
hvu00510	N-Glycan biosynthesis	2
hvu00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	10
hvu00010	Glycolysis / Gluconeogenesis	2
hvu00030	Pentose phosphate pathway	2
hvu00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	9
sbi00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	10
sbi00071	Fatty acid degradation	2
sbi00280	Valine, leucine and isoleucine degradation	2
sbi00310	Lysine degradation	2
sbi00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	6
bdi04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03050	Proteasome	19

Expression

Expression pattern

Entrez Gene ID^*

100306084

100527027

11417396

11445740

7460354

7460968

844080

838776

103853073

103835733

100250625

121230380

107951479

106446603

106396984

102614137

101259528

102599420

107826949

107817251

4328517

4341637

100382784

100272320

123149572

123136532

123403355

123411078

8079409

8067705

100831014

100822862

5721912

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Species	gma	mtr	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	2	2	2	1	1	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100499664 (gma-u.5 coexpression data)

Top 50 enrichment test to 100499664 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**