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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100500020   TRAPPC_bet3-like domain-containing protein 
 gma-r.7   100500020   TRAPPC_bet3-like domain-containing protein 
 gma-u.5   100783297   trafficking protein particle complex subunit 6B 
 mtr-u.5   11423174   trafficking protein particle complex subunit 6B 
 ppo-u.5   18098882   uncharacterized LOC18098882 
 ppo-u.5   7473322   uncharacterized LOC7473322 
 ath-u.5   AT3G05000   Transport protein particle (TRAPP) component 
 vvi-u.5   100258923   trafficking protein particle complex subunit 6B-like 
 sly-u.5   101264318   uncharacterized LOC101264318 
 osa-u.5   4342949   uncharacterized LOC4342949 
 osa-u.5   4346489   uncharacterized LOC4346489 
 zma-u.5   100282812   uncharacterized LOC100282812 
 zma-u.5   100283925   uncharacterized LOC100283925 

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Top 50 coexpressed genes to 100500020 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100500020 (gma-u.5 coexpression data)

CoexMap"100500020"


gmaLOC100500020 | Entrez gene ID : 100500020      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 2 1 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0043087 [list] [network] regulation of GTPase activity  (40 genes)  IEA  
GO:0006888 [list] [network] endoplasmic reticulum to Golgi vesicle-mediated transport  (170 genes)  IEA  
GO CC
GO:0030008 [list] [network] TRAPP complex  (22 genes)  IEA  
GO:0005801 [list] [network] cis-Golgi network  (24 genes)  IEA  
GO:0005802 [list] [network] trans-Golgi network  (213 genes)  IEA  
GO MF
Protein NP_001235695.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 3,  mito 1,  cysk_nucl 1  (predict for NP_001235695.2)
Subcellular
localization
TargetP
other 6  (predict for NP_001235695.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100500020

.
gma-r.7
for
100500020

.
gma-u.5
for
100783297

.
mtr-u.5
for
11423174

.
ppo-u.5
for
18098882

.
ppo-u.5
for
7473322

.
ath-u.5
for
AT3G05000

.
vvi-u.5
for
100258923

.
sly-u.5
for
101264318

.
osa-u.5
for
4342949

.
osa-u.5
for
4346489

.
zma-u.5
for
100282812

.
zma-u.5
for
100283925

.


Ortholog ID: 7194
Species ath gma gma sly osa osa zma zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi bdi nta nta
Symbol AT3G05000 LOC100500020 LOC100783297 LOC101264318 LOC4346489 LOC4342949 LOC100283925 LOC100282812 LOC103870870 LOC100258923 LOC7473322 LOC18098882 LOC11423174 LOC123103347 LOC123111542 LOC123395597 LOC107961859 LOC121223110 LOC106453007 LOC106453071 CHLRE_16g663650v5 LOC8155310 LOC102591250 LOC102629826 LOC100821325 LOC100842892 LOC107770517 LOC107814879
Function* Transport protein particle (TRAPP) component TRAPPC_bet3-like domain-containing protein trafficking protein particle complex subunit 6B uncharacterized LOC101264318 uncharacterized LOC4346489 uncharacterized LOC4342949 uncharacterized LOC100283925 uncharacterized LOC100282812 trafficking protein particle complex subunit 6B trafficking protein particle complex subunit 6B-like uncharacterized LOC7473322 uncharacterized LOC18098882 trafficking protein particle complex subunit 6B trafficking protein particle complex subunit 6b trafficking protein particle complex subunit 6b trafficking protein particle complex subunit 6b trafficking protein particle complex subunit 6B trafficking protein particle complex subunit 6B trafficking protein particle complex subunit 6B trafficking protein particle complex subunit 6B-like uncharacterized protein trafficking protein particle complex subunit 6B trafficking protein particle complex subunit 6B uncharacterized LOC102629826 trafficking protein particle complex subunit 6B trafficking protein particle complex subunit 6B uncharacterized LOC107770517 uncharacterized LOC107814879
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04130 SNARE interactions in vesicular transport 2
ath04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 2
osa04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 5
osa04145 Phagosome 5
osa04142 Lysosome 3
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 6
zma03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 4
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 5
vvi04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 5
ppo04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 7
ppo03050 Proteasome 5
ppo03060 Protein export 2
ppo00510 N-Glycan biosynthesis 2
ppo00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 2
mtr04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 3
tae04142 Lysosome 3
tae04145 Phagosome 3
tae04144 Endocytosis 3
tae00510 N-Glycan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 3
tae04142 Lysosome 3
tae04145 Phagosome 3
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 7
bna03060 Protein export 3
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00190 Oxidative phosphorylation 3
cre00510 N-Glycan biosynthesis 2
cre00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04130 SNARE interactions in vesicular transport 2
sbi03050 Proteasome 2
sbi03015 mRNA surveillance pathway 2
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 5
sot04142 Lysosome 5
sot04145 Phagosome 5
sot03050 Proteasome 4
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04145 Phagosome 3
cit03060 Protein export 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 4
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 5
bdi04016 MAPK signaling pathway - plant 2
bdi04070 Phosphatidylinositol signaling system 2
bdi04075 Plant hormone signal transduction 2
bdi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 3
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
nta04146 Peroxisome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819661 100500020 100783297 101264318 4346489 4342949 100283925 100282812 103870870 100258923 7473322 18098882 11423174 123103347 123111542 123395597 107961859 121223110 106453007 106453071 5727033 8155310 102591250 102629826 100821325 100842892 107770517 107814879
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