ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100527137	cyclin-U1-1-like
gma-r.7	100527137	cyclin-U1-1-like
gma-m.5	100527137	cyclin-U1-1-like
gma-u.5	100787133	cyclin-P3-1
gma-u.5	100794854	cyclin-U4-1
gma-u.5	100804706	cyclin-U1-1
mtr-u.5	25500113	cyclin-U4-1
mtr-u.5	11413228	cyclin-U1-1
mtr-u.5	11428922	cyclin-U4-1
ppo-u.5	18103858	cyclin-U4-1
ppo-u.5	7480042	cyclin-U3-1
ppo-u.5	18098790	cyclin-P3-1
ath-u.5	CYCP4;1	cyclin p4;1
ath-u.5	CYCP2;1	cyclin p2;1
ath-u.5	CYCP1;1	cyclin p1;1
bra-r.6	103847057	cyclin-U4-2
bra-r.6	103858142	cyclin-U4-1
bra-r.6	103869134	cyclin-U1-1
vvi-u.5	100254595	cyclin-P3-1
vvi-u.5	100263322	cyclin-U4-1
ghi-r.1	107914663	cyclin-U3-1
ghi-r.1	107912434	cyclin-P3-1
ghi-r.1	107911860	cyclin-U4-1
cit-r.1	127901105	cyclin-U4-1-like
cit-r.1	102614452	cyclin-P3-1
sly-u.5	101248793	cyclin-U1-1
sly-u.5	101256326	cyclin-P3-1
sly-u.5	101251921	cyclin-U4-1
sot-r.1	102588890	cyclin-U4-1-like
sot-r.1	102587169	cyclin-P3-1
sot-r.1	102588031	cyclin-P3-1-like
nta-r.1	107811449	cyclin-U4-1
nta-r.1	107816272	cyclin-P3-1
nta-r.1	107816688	cyclin-U1-1
osa-u.5	9271995	cyclin-P1-1
osa-u.5	4349405	cyclin-P4-1-like
osa-u.5	4338711	cyclin-P3-1-like
zma-u.5	100283473	uncharacterized LOC100283473
zma-u.5	100502430	uncharacterized LOC100502430
zma-u.5	100284747	cyclin-dependent protein kinase
tae-r.2	123041732	cyclin-P4-1
tae-r.2	123042223	cyclin-P1-1
hvu-r.1	123441944	cyclin-P3-1-like
hvu-r.1	123430901	cyclin-P1-1
hvu-r.1	123427407	cyclin-P4-1-like
sbi-r.1	8055631	cyclin-P4-1
sbi-r.1	8055939	cyclin-P4-1
sbi-r.1	8076249	cyclin-P4-1
bdi-r.1	100824073	cyclin-P3-1
bdi-r.1	100829155	cyclin-P4-1
bdi-r.1	100835427	cyclin-P4-1
cre-r.1	CHLRE_02g118050v5	uncharacterized protein

Top 50 coexpressed genes to 100527137 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100527137 (gma-u.5 coexpression data)

CoexMap"100527137"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0000079 [list] [network] regulation of cyclin-dependent protein serine/threonine kinase activity

(102 genes)

IEA

GO CC

GO MF

GO:0019901 [list] [network] protein kinase binding

(65 genes)

IEA

Protein

NP_001235448.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, nucl 3, extr 1, cysk_nucl 1, nucl_plas 1

(predict for NP_001235448.1)

Subcellular
localization
TargetP

other 7

(predict for NP_001235448.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100527137	gma-r.7 for 100527137	gma-m.5 for 100527137	gma-u.5 for 100787133	gma-u.5 for 100794854	gma-u.5 for 100804706	mtr-u.5 for 25500113	mtr-u.5 for 11413228	mtr-u.5 for 11428922	ppo-u.5 for 18103858	ppo-u.5 for 7480042	ppo-u.5 for 18098790	ath-u.5 for CYCP4;1	ath-u.5 for CYCP2;1	ath-u.5 for CYCP1;1	bra-r.6 for 103847057	bra-r.6 for 103858142	bra-r.6 for 103869134	vvi-u.5 for 100254595	vvi-u.5 for 100263322	ghi-r.1 for 107914663	ghi-r.1 for 107912434	ghi-r.1 for 107911860	cit-r.1 for 127901105	cit-r.1 for 102614452	sly-u.5 for 101248793	sly-u.5 for 101256326	sly-u.5 for 101251921	sot-r.1 for 102588890	sot-r.1 for 102587169	sot-r.1 for 102588031	nta-r.1 for 107811449	nta-r.1 for 107816272	nta-r.1 for 107816688	osa-u.5 for 9271995	osa-u.5 for 4349405	osa-u.5 for 4338711	zma-u.5 for 100283473	zma-u.5 for 100502430	zma-u.5 for 100284747	tae-r.2 for 123041732	tae-r.2 for 123042223	hvu-r.1 for 123441944	hvu-r.1 for 123430901	hvu-r.1 for 123427407	sbi-r.1 for 8055631	sbi-r.1 for 8055939	sbi-r.1 for 8076249	bdi-r.1 for 100824073	bdi-r.1 for 100829155	bdi-r.1 for 100835427	cre-r.1 for CHLRE_02g118050v5

Ortholog

Ortholog ID: 426

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

CYCP4;1

CYCP1;1

Function^*

cyclin-U1-1-like

cyclin-P3-1

cyclin box fold protein binding domain-containing protein

cyclin-U4-1

cyclin-P3-1

cyclin-U4-1

cyclin-P3-1

cyclin-U1-1

cyclin p4;1

cyclin p1;1

cyclin-U3-1

cyclin-U4-1

cyclin-P3-1

cyclin-U1-1

cyclin-U4-1

cyclin-U3-1

cyclin-U1-1

cyclin-U4-1-like

cyclin-U1-1

cyclin-U4-1

cyclin-U1-1

cyclin-P3-1

cyclin-U4-1

cyclin-P3-1

cyclin-P3-1-like

cyclin-U4-1

cyclin-P3-1

cyclin-U4-1-like

cyclin-P3-1-like

cyclin-P1-1

cyclin-P3-1-like

cyclin-P4-1-like

uncharacterized LOC100283473

cyclin-dependent protein kinase

cyclin-P4-1

cyclin-P3-1-like

cyclin-P4-1-like

cyclin-P4-1

cyclin-P3-1

cyclin-P4-1

cyclin-P1-1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00480	Glutathione metabolism	2
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01240	Biosynthesis of cofactors	4
ppo00040	Pentose and glucuronate interconversions	3
ppo00053	Ascorbate and aldarate metabolism	3
ppo00520	Amino sugar and nucleotide sugar metabolism	3
ppo00541	Biosynthesis of various nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	4
bra00400	Phenylalanine, tyrosine and tryptophan biosynthesis	4
bra01230	Biosynthesis of amino acids	4
bra00520	Amino sugar and nucleotide sugar metabolism	2
bra01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00940	Phenylpropanoid biosynthesis	3
ghi00905	Brassinosteroid biosynthesis	2
ghi00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00280	Valine, leucine and isoleucine degradation	4
bna00650	Butanoate metabolism	4
bna04146	Peroxisome	4
bna00760	Nicotinate and nicotinamide metabolism	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00710	Carbon fixation by Calvin cycle	3
bna01200	Carbon metabolism	3
bna00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01200	Carbon metabolism	2
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00514	Other types of O-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00500	Starch and sucrose metabolism	3
osa04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00240	Pyrimidine metabolism	2
tae00760	Nicotinate and nicotinamide metabolism	2
tae01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	3
hvu01230	Biosynthesis of amino acids	2
hvu00260	Glycine, serine and threonine metabolism	2
hvu00630	Glyoxylate and dicarboxylate metabolism	2
hvu00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	5
sbi03082	ATP-dependent chromatin remodeling	3
sbi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00500	Starch and sucrose metabolism	4
sbi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	4
bdi03060	Protein export	3
bdi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	4
bdi00710	Carbon fixation by Calvin cycle	3
bdi00010	Glycolysis / Gluconeogenesis	2
bdi00030	Pentose phosphate pathway	2
bdi00051	Fructose and mannose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

100527137

100805926

100305689

25500113

11428922

25499116

18103858

18098790

7485003

819082

825487

103842116

103866152

100254595

100261965

107886908

107929642

107933493

106411589

106402571

106454570

102619769

102622295

102629237

101248793

101256326

101251921

102587169

102588031

102581077

107816272

107784510

107795513

9271995

4338711

4336556

100283473

100284747

103627539

123054083

123091974

123144971

123441944

123427407

123411641

8055631

8055939

8076870

100824073

100835427

106865488

5727968

The preparation time of this page was 0.1 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre	bna
Paralog	6	3	3	3	3	2	3	2	3	3	3	3	3	2	3	3	3	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100527137 (gma-u.5 coexpression data)

Top 50 enrichment test to 100527137 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**