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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   ARF1   auxin response factor 1 
 sly-r.6   ARF1   auxin response factor 1 
 ath-u.5   ARF1   auxin response factor 1 
 gma-u.5   100819023   auxin response factor 1 
 gma-u.5   100815450   auxin response factor 1 
 gma-u.5   100793224   auxin response factor 1 
 vvi-u.5   100263592   auxin response factor 1 
 vvi-u.5   100264303   auxin response factor 1 
 ppo-u.5   18098365   auxin response factor 1 
 ppo-u.5   18096589   auxin response factor 1 
 mtr-u.5   11423560   auxin response factor 1 
 osa-u.5   4329672   auxin response factor 7-like 
 osa-u.5   4335934   auxin response factor 9-like 
 zma-u.5   100502393   uncharacterized LOC100502393 
 zma-u.5   100285977   uncharacterized LOC100285977 
 zma-u.5   103646418   auxin response factor 9 

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Top 50 coexpressed genes to ARF1 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ARF1 (sly-u.5 coexpression data)

CoexMap"100736509"


slyARF1 | Entrez gene ID : 100736509      
Species sly ath gma vvi ppo mtr osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 1 3 2 2 1 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly04075 [list] [network] Plant hormone signal transduction (437 genes)
GO BP
GO:0009725 [list] [network] response to hormone  (341 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1608 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2947 genes)  IEA  
GO MF
GO:0003677 [list] [network] DNA binding  (1883 genes)  IEA  
GO:0005515 [list] [network] protein binding  (3982 genes)  IEA  
Protein NP_001234871.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  chlo 1  (predict for NP_001234871.2)
Subcellular
localization
TargetP
other 7  (predict for NP_001234871.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
ARF1

.
sly-r.6
for
ARF1

.
ath-u.5
for
ARF1

.
gma-u.5
for
100819023

.
gma-u.5
for
100815450

.
gma-u.5
for
100793224

.
vvi-u.5
for
100263592

.
vvi-u.5
for
100264303

.
ppo-u.5
for
18098365

.
ppo-u.5
for
18096589

.
mtr-u.5
for
11423560

.
osa-u.5
for
4329672

.
osa-u.5
for
4335934

.
zma-u.5
for
100502393

.
zma-u.5
for
100285977

.
zma-u.5
for
103646418

.


Ortholog ID: 6736
Species ath gma gma sly osa osa zma zma bra vvi vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sbi sot cit cit bdi bdi nta nta
Symbol ARF1 LOC100819023 LOC100815450 ARF1 LOC4335934 LOC4329672 LOC100285977 LOC100502393 LOC103829217 LOC100264303 LOC100263592 LOC18098365 LOC18096589 LOC11423560 LOC123189292 LOC123053385 LOC123426793 LOC107896654 LOC107914201 LOC106376742 LOC106376940 LOC8068888 LOC8080341 LOC102604408 LOC102611261 LOC102618110 LOC100842263 LOC100826105 LOC107770412 LOC107818819
Function* auxin response factor 1 auxin response factor 1 auxin response factor 1 auxin response factor 1 auxin response factor 9-like auxin response factor 7-like uncharacterized LOC100285977 uncharacterized LOC100502393 auxin response factor 1 auxin response factor 1 auxin response factor 1 auxin response factor 1 auxin response factor 1 auxin response factor 1 auxin response factor 9 auxin response factor 9 auxin response factor 9 auxin response factor 1 auxin response factor 1-like auxin response factor 1 auxin response factor 1 auxin response factor 7 auxin response factor 9 auxin response factor 1 auxin response factor 1-like auxin response factor 1 auxin response factor 7 auxin response factor 9 auxin response factor 1 auxin response factor 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma04075 Plant hormone signal transduction 3
gma03083 Polycomb repressive complex 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 4
sly04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 5
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 4
vvi03013 Nucleocytoplasmic transport 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04145 Phagosome 3
ppo04144 Endocytosis 2
ppo04517 IgSF CAM signaling 2
ppo04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 10
tae00010 Glycolysis / Gluconeogenesis 3
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
tae00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 2
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 3
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842268 100819023 100815450 100736509 4335934 4329672 100285977 100502393 103829217 100264303 100263592 18098365 18096589 11423560 123189292 123053385 123426793 107896654 107914201 106376742 106376940 8068888 8080341 102604408 102611261 102618110 100842263 100826105 107770412 107818819
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