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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100777602   eukaryotic translation initiation factor 6-2 
 gma-r.7   100777602   eukaryotic translation initiation factor 6-2 
 gma-u.5   100306262   eukaryotic translation initiation factor 6 
 gma-u.5   100800352   eukaryotic translation initiation factor 6-2 
 gma-u.5   100813909   eukaryotic translation initiation factor 6-2 
 mtr-u.5   112417130   eukaryotic translation initiation factor 6-2 
 mtr-u.5   25484520   eukaryotic translation initiation factor 6-2 
 mtr-u.5   11414055   eukaryotic translation initiation factor 6-2 
 ppo-u.5   7468450   eukaryotic translation initiation factor 6-2 
 ppo-u.5   7462577   eukaryotic translation initiation factor 6-2 
 ath-u.5   eIF6A   Translation initiation factor IF6 
 bra-r.6   103841473   eukaryotic translation initiation factor 6-2 
 vvi-u.5   100254404   eukaryotic translation initiation factor 6-2 
 ghi-r.1   107904164   eukaryotic translation initiation factor 6-2 
 ghi-r.1   107915784   eukaryotic translation initiation factor 6-2 
 ghi-r.1   107957423   eukaryotic translation initiation factor 6-2 
 bna-r.1   106445367   eukaryotic translation initiation factor 6-2 
 bna-r.1   106411597   eukaryotic translation initiation factor 6-2 
 bna-r.1   106376621   eukaryotic translation initiation factor 6-2 
 cit-r.1   102614879   eukaryotic translation initiation factor 6-2 
 cit-r.1   102622866   eukaryotic translation initiation factor 6-2-like 
 sly-u.5   101255078   eukaryotic translation initiation factor 6-2 
 sot-r.1   102590111   eukaryotic translation initiation factor 6-2-like 
 sot-r.1   102603261   eukaryotic translation initiation factor 6-2-like 
 sot-r.1   102585928   eukaryotic translation initiation factor 6-2 
 nta-r.1   107828571   eukaryotic translation initiation factor 6-2 
 nta-r.1   107790111   eukaryotic translation initiation factor 6-2 
 osa-u.5   4344055   eukaryotic translation initiation factor 6-2 
 osa-u.5   4326910   eukaryotic translation initiation factor 6-2 
 zma-u.5   100282567   eukaryotic translation initiation factor 6 
 tae-r.2   123051914   eukaryotic translation initiation factor 6-2 
 tae-r.2   123044037   eukaryotic translation initiation factor 6-2 
 tae-r.2   123187796   eukaryotic translation initiation factor 6-2 
 hvu-r.1   123425080   eukaryotic translation initiation factor 6-2 
 sbi-r.1   8080656   eukaryotic translation initiation factor 6-2 
 bdi-r.1   100846580   eukaryotic translation initiation factor 6-2 
 bdi-r.1   100826654   eukaryotic translation initiation factor 6-2 
 cre-r.1   CHLRE_13g585150v5   uncharacterized protein 

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Top 50 coexpressed genes to 100777602 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100777602 (gma-u.5 coexpression data)

CoexMap"100777602"


gmaLOC100777602 | Entrez gene ID : 100777602      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 5 3 2 1 1 1 3 3 2 1 3 2 2 1 3 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03008 [list] [network] Ribosome biogenesis in eukaryotes (605 genes)
GO BP
GO:1902626 [list] [network] assembly of large subunit precursor of preribosome  (4 genes)  IEA  
GO:0042256 [list] [network] cytosolic ribosome assembly  (10 genes)  IEA  
GO:0000054 [list] [network] ribosomal subunit export from nucleus  (28 genes)  IEA  
GO:0000460 [list] [network] maturation of 5.8S rRNA  (59 genes)  IEA  
GO:0000470 [list] [network] maturation of LSU-rRNA  (75 genes)  IEA  
GO CC
GO:0030687 [list] [network] preribosome, large subunit precursor  (41 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (353 genes)  IEA  
GO:0005829 [list] [network] cytosol  (1702 genes)  IEA  
GO MF
GO:0043023 [list] [network] ribosomal large subunit binding  (16 genes)  IEA  
Protein XP_003556413.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 1,  plas 1  (predict for XP_003556413.1)
Subcellular
localization
TargetP
scret 5,  other 5  (predict for XP_003556413.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100777602
gma-r.7
for
100777602
gma-u.5
for
100306262
gma-u.5
for
100800352
gma-u.5
for
100813909
mtr-u.5
for
112417130
mtr-u.5
for
25484520
mtr-u.5
for
11414055
ppo-u.5
for
7468450
ppo-u.5
for
7462577
ath-u.5
for
eIF6A
bra-r.6
for
103841473
vvi-u.5
for
100254404
ghi-r.1
for
107904164
ghi-r.1
for
107915784
ghi-r.1
for
107957423
bna-r.1
for
106445367
bna-r.1
for
106411597
bna-r.1
for
106376621
cit-r.1
for
102614879
cit-r.1
for
102622866
sly-u.5
for
101255078
sot-r.1
for
102590111
sot-r.1
for
102603261
sot-r.1
for
102585928
nta-r.1
for
107828571
nta-r.1
for
107790111
osa-u.5
for
4344055
osa-u.5
for
4326910
zma-u.5
for
100282567
tae-r.2
for
123051914
tae-r.2
for
123044037
tae-r.2
for
123187796
hvu-r.1
for
123425080
sbi-r.1
for
8080656
bdi-r.1
for
100846580
bdi-r.1
for
100826654
cre-r.1
for
CHLRE_13g585150v5


Ortholog ID: 4255
Species gma gma gma mtr mtr mtr ppo ppo ath bra vvi ghi ghi ghi bna bna bna cit cit sly sot sot sot nta nta osa osa zma tae tae tae hvu sbi bdi bdi cre
Symbol LOC100306262 LOC100800352 LOC100813909 LOC112417130 LOC25484520 LOC11414055 LOC7468450 LOC7462577 eIF6A LOC103841473 LOC100254404 LOC107904164 LOC107915784 LOC121222514 LOC106445367 LOC106411597 LOC106376621 LOC102614879 LOC102622866 LOC101255078 LOC102590111 LOC102603261 LOC102585928 LOC107828571 LOC107790111 LOC4344055 LOC4326910 LOC100282567 LOC123051914 LOC123044037 LOC123187796 LOC123425080 LOC8080656 LOC100846580 LOC100826654 CHLRE_13g585150v5
Function* eukaryotic translation initiation factor 6 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 Translation initiation factor IF6 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2-like eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2-like eukaryotic translation initiation factor 6-2-like eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 3
mtr04141 Protein processing in endoplasmic reticulum 3
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 9
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 16
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
ath03040 Spliceosome 3
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03420 Nucleotide excision repair 3
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03050 Proteasome 4
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 9
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03015 mRNA surveillance pathway 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 8
ghi03050 Proteasome 6
ghi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
cit03040 Spliceosome 4
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit03010 Ribosome 3
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 3
sot03440 Homologous recombination 2
sot03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta04712 Circadian rhythm - plant 4
nta04122 Sulfur relay system 2
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00071 Fatty acid degradation 2
nta04122 Sulfur relay system 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 5
osa03018 RNA degradation 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 4
tae03008 Ribosome biogenesis in eukaryotes 3
tae03050 Proteasome 3
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 4
tae03008 Ribosome biogenesis in eukaryotes 3
tae03050 Proteasome 2
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 3
hvu03420 Nucleotide excision repair 2
hvu03015 mRNA surveillance pathway 2
hvu03040 Spliceosome 2
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 6
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100306262 100800352 100813909 112417130 25484520 11414055 7468450 7462577 824728 103841473 100254404 107904164 107915784 121222514 106445367 106411597 106376621 102614879 102622866 101255078 102590111 102603261 102585928 107828571 107790111 4344055 4326910 100282567 123051914 123044037 123187796 123425080 8080656 100846580 100826654 5719388
The preparation time of this page was 1.5 [sec].