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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100800352   eukaryotic translation initiation factor 6-2 
 gma-r.7   100800352   eukaryotic translation initiation factor 6-2 
 gma-u.5   100306262   eukaryotic translation initiation factor 6 
 gma-u.5   100777602   eukaryotic translation initiation factor 6-2 
 gma-u.5   100813909   eukaryotic translation initiation factor 6-2 
 mtr-u.5   112417130   eukaryotic translation initiation factor 6-2 
 mtr-u.5   25484520   eukaryotic translation initiation factor 6-2 
 mtr-u.5   11414055   eukaryotic translation initiation factor 6-2 
 ppo-u.5   7468450   eukaryotic translation initiation factor 6-2 
 ppo-u.5   7462577   eukaryotic translation initiation factor 6-2 
 ath-u.5   eIF6A   Translation initiation factor IF6 
 vvi-u.5   100254404   eukaryotic translation initiation factor 6-2 
 sly-u.5   101255078   eukaryotic translation initiation factor 6-2 
 osa-u.5   4344055   eukaryotic translation initiation factor 6-2 
 osa-u.5   4326910   eukaryotic translation initiation factor 6-2 
 zma-u.5   100282567   eukaryotic translation initiation factor 6 

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Top 50 coexpressed genes to 100800352 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100800352 (gma-u.5 coexpression data)

CoexMap"100800352"


gmaLOC100800352 | Entrez gene ID : 100800352    
Species gma mtr ppo ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 5 3 2 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03008 [list] [network] Ribosome biogenesis in eukaryotes (605 genes)
GO BP
GO:1902626 [list] [network] assembly of large subunit precursor of preribosome  (4 genes)  IEA  
GO:0042256 [list] [network] cytosolic ribosome assembly  (10 genes)  IEA  
GO:0000054 [list] [network] ribosomal subunit export from nucleus  (28 genes)  IEA  
GO:0000460 [list] [network] maturation of 5.8S rRNA  (59 genes)  IEA  
GO:0000470 [list] [network] maturation of LSU-rRNA  (75 genes)  IEA  
GO CC
GO:0030687 [list] [network] preribosome, large subunit precursor  (41 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (353 genes)  IEA  
GO:0005829 [list] [network] cytosol  (1702 genes)  IEA  
GO MF
GO:0043023 [list] [network] ribosomal large subunit binding  (16 genes)  IEA  
Protein XP_014624279.2 [sequence] [blastp]
XP_040866580.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 1,  plas 1  (predict for XP_014624279.2)
cyto 6,  chlo 1,  plas 1  (predict for XP_040866580.1)
Subcellular
localization
TargetP
other 4,  scret 4  (predict for XP_014624279.2)
other 4,  scret 4  (predict for XP_040866580.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100800352

.
gma-r.7
for
100800352

.
gma-u.5
for
100306262

.
gma-u.5
for
100777602

.
gma-u.5
for
100813909

.
mtr-u.5
for
112417130

.
mtr-u.5
for
25484520

.
mtr-u.5
for
11414055

.
ppo-u.5
for
7468450

.
ppo-u.5
for
7462577

.
ath-u.5
for
eIF6A

.
vvi-u.5
for
100254404

.
sly-u.5
for
101255078

.
osa-u.5
for
4344055

.
osa-u.5
for
4326910

.
zma-u.5
for
100282567

.


Ortholog ID: 4255
Species ath gma gma sly osa osa zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit cit bdi bdi nta nta
Symbol eIF6A LOC100813909 LOC100306262 LOC101255078 LOC4344055 LOC4326910 LOC100282567 LOC103841473 LOC100254404 LOC7468450 LOC11414055 LOC112417130 LOC123187796 LOC123051914 LOC123425080 LOC107915784 LOC121222514 LOC106445367 LOC106411597 CHLRE_13g585150v5 LOC8080656 LOC102585928 LOC102590111 LOC102614879 LOC102622866 LOC100826654 LOC100846580 LOC107790111 LOC107828571
Function* Translation initiation factor IF6 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 uncharacterized protein eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2-like eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2-like eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2 eukaryotic translation initiation factor 6-2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
ath03040 Spliceosome 3
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 5
osa03018 RNA degradation 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03420 Nucleotide excision repair 3
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 9
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 4
tae03420 Nucleotide excision repair 4
tae03008 Ribosome biogenesis in eukaryotes 3
tae03050 Proteasome 2
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 3
hvu03420 Nucleotide excision repair 2
hvu03015 mRNA surveillance pathway 2
hvu03040 Spliceosome 2
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 9
ghi03008 Ribosome biogenesis in eukaryotes 4
ghi03015 mRNA surveillance pathway 2
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 8
ghi03050 Proteasome 6
ghi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 6
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
cit03040 Spliceosome 4
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit03010 Ribosome 3
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00071 Fatty acid degradation 2
nta04122 Sulfur relay system 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta04712 Circadian rhythm - plant 4
nta04122 Sulfur relay system 2
nta04146 Peroxisome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824728 100813909 100306262 101255078 4344055 4326910 100282567 103841473 100254404 7468450 11414055 112417130 123187796 123051914 123425080 107915784 121222514 106445367 106411597 5719388 8080656 102585928 102590111 102614879 102622866 100826654 100846580 107790111 107828571
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