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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100781412   pentatricopeptide repeat-containing protein At1g62350-like 
 gma-r.7   100781412   pentatricopeptide repeat-containing protein At1g62350-like 
 mtr-u.5   11431429   pentatricopeptide repeat-containing protein At3g04760, chloroplastic 
 ppo-u.5   7469572   pentatricopeptide repeat-containing protein At1g62350 
 vvi-u.5   100264450   pentatricopeptide repeat-containing protein At1g62350 
 sly-u.5   101258221   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 

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Top 50 coexpressed genes to 100781412 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100781412 (gma-u.5 coexpression data)

CoexMap"100781412"


gmaLOC100781412 | Entrez gene ID : 100781412      
Species gma mtr ppo vvi sly sot hvu ath tae cit sbi zma ghi cre bna nta bdi bra osa
Paralog 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx00520 [list] [network] Amino sugar and nucleotide sugar metabolism (233 genes)
GO BP
GO:0000373 [list] [network] Group II intron splicing  (11 genes)  IEA  
GO:0009658 [list] [network] chloroplast organization  (139 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (2019 genes)  IEA  
GO:0005515 [list] [network] protein binding  (7243 genes)  IEA  
Protein NP_001240168.1 [sequence] [blastp]
XP_006597003.1 [sequence] [blastp]
XP_014622825.1 [sequence] [blastp]
XP_040865363.1 [sequence] [blastp]
XP_040865364.1 [sequence] [blastp]
XP_040865365.1 [sequence] [blastp]
XP_040865366.1 [sequence] [blastp]
XP_040865367.1 [sequence] [blastp]
XP_040865368.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  mito 1  (predict for NP_001240168.1)
chlo 9,  nucl 1,  mito 1  (predict for XP_006597003.1)
nucl 5,  chlo 1,  cyto 1,  mito 1,  plas 1,  extr 1,  pero 1,  cyto_pero 1,  mito_plas 1,  cyto_plas 1  (predict for XP_014622825.1)
chlo 9,  nucl 1,  mito 1  (predict for XP_040865363.1)
chlo 9,  nucl 1,  mito 1  (predict for XP_040865364.1)
extr 2,  nucl 1,  cyto 1,  mito 1,  cyto_nucl 1,  chlo 1,  plas 1,  vacu 1,  E.R. 1,  golg 1,  cyto_mito 1,  cysk_nucl 1,  golg_plas 1,  E.R._vacu 1,  cyto_pero 1,  E.R._plas 1  (predict for XP_040865365.1)
nucl 5,  chlo 1,  cyto 1,  mito 1,  plas 1,  extr 1,  pero 1,  cyto_pero 1,  mito_plas 1,  cyto_plas 1  (predict for XP_040865366.1)
nucl 5,  chlo 1,  cyto 1,  mito 1,  plas 1,  extr 1,  pero 1,  cyto_pero 1,  mito_plas 1,  cyto_plas 1  (predict for XP_040865367.1)
nucl 5,  chlo 1,  cyto 1,  mito 1,  plas 1,  extr 1,  pero 1,  cyto_pero 1,  mito_plas 1,  cyto_plas 1  (predict for XP_040865368.1)
Subcellular
localization
TargetP
mito 7  (predict for NP_001240168.1)
mito 7  (predict for XP_006597003.1)
chlo 7  (predict for XP_014622825.1)
mito 7  (predict for XP_040865363.1)
mito 7  (predict for XP_040865364.1)
chlo 7  (predict for XP_040865365.1)
chlo 7  (predict for XP_040865366.1)
chlo 7  (predict for XP_040865367.1)
chlo 7  (predict for XP_040865368.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100781412

.
gma-r.7
for
100781412

.
mtr-u.5
for
11431429

.
ppo-u.5
for
7469572

.
vvi-u.5
for
100264450

.
sly-u.5
for
101258221

.


Ortholog ID: 14999
Species gma sly vvi ppo mtr ghi ghi sot cit nta nta
Symbol LOC100781412 LOC101258221 LOC100264450 LOC7469572 LOC11431429 LOC107910284 LOC107951351 LOC102599303 LOC102627844 LOC107759284 LOC107770871
Function* pentatricopeptide repeat-containing protein At1g62350-like protein THYLAKOID ASSEMBLY 8-like, chloroplastic pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At3g04760, chloroplastic pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At3g46870-like protein THYLAKOID ASSEMBLY 8-like, chloroplastic protein THYLAKOID ASSEMBLY 8-like, chloroplastic protein THYLAKOID ASSEMBLY 8-like, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04130 SNARE interactions in vesicular transport 2
gma03008 Ribosome biogenesis in eukaryotes 2
gma03083 Polycomb repressive complex 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 4
sot04016 MAPK signaling pathway - plant 2
sot04075 Plant hormone signal transduction 2
sot04626 Plant-pathogen interaction 2
sot04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100781412 101258221 100264450 7469572 11431429 107910284 107951351 102599303 102627844 107759284 107770871
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