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Orthologous genes in OrthoFinder**

Species Gene Description
 mtr-u.5   11431429   pentatricopeptide repeat-containing protein At3g04760, chloroplastic 
 mtr-r.5   11431429   pentatricopeptide repeat-containing protein At3g04760, chloroplastic 
 mtr-m.5   11431429   pentatricopeptide repeat-containing protein At3g04760, chloroplastic 
 gma-u.5   100781412   pentatricopeptide repeat-containing protein At1g62350-like 
 ppo-u.5   7469572   pentatricopeptide repeat-containing protein At1g62350 
 vvi-u.5   100264450   pentatricopeptide repeat-containing protein At1g62350 
 sly-u.5   101258221   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 

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Top 50 coexpressed genes to 11431429 (mtr-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 11431429 (mtr-u.5 coexpression data)

CoexMap"11431429"


mtrLOC11431429 | Entrez gene ID : 11431429      
Species mtr gma ppo vvi sly nta bna osa tae bdi sot ath sbi bra hvu cit zma cre ghi
Paralog 3 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG mtr00520 [list] [network] Amino sugar and nucleotide sugar metabolism (138 genes)
GO BP
GO:0000373 [list] [network] Group II intron splicing  (7 genes)  IEA  
GO:0009658 [list] [network] chloroplast organization  (62 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1400 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5045 genes)  IEA  
Protein XP_003597543.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  chlo_mito 5,  mito 2,  cyto_mito 1  (predict for XP_003597543.1)
Subcellular
localization
TargetP
chlo 5  (predict for XP_003597543.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

mtr-u.5
for
11431429

.
mtr-r.5
for
11431429

.
mtr-m.5
for
11431429

.
gma-u.5
for
100781412

.
ppo-u.5
for
7469572

.
vvi-u.5
for
100264450

.
sly-u.5
for
101258221

.


Ortholog ID: 14999
Species gma sly vvi ppo mtr ghi ghi sot cit nta nta
Symbol LOC100781412 LOC101258221 LOC100264450 LOC7469572 LOC11431429 LOC107910284 LOC107951351 LOC102599303 LOC102627844 LOC107759284 LOC107770871
Function* pentatricopeptide repeat-containing protein At1g62350-like protein THYLAKOID ASSEMBLY 8-like, chloroplastic pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At3g04760, chloroplastic pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At3g46870-like protein THYLAKOID ASSEMBLY 8-like, chloroplastic protein THYLAKOID ASSEMBLY 8-like, chloroplastic protein THYLAKOID ASSEMBLY 8-like, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04130 SNARE interactions in vesicular transport 2
gma03008 Ribosome biogenesis in eukaryotes 2
gma03083 Polycomb repressive complex 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 4
sot04016 MAPK signaling pathway - plant 2
sot04075 Plant hormone signal transduction 2
sot04626 Plant-pathogen interaction 2
sot04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100781412 101258221 100264450 7469572 11431429 107910284 107951351 102599303 102627844 107759284 107770871
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