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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100782220   pentatricopeptide repeat-containing protein At1g62350 
 gma-r.7   100782220   pentatricopeptide repeat-containing protein At1g62350 
 gma-m.5   100782220   pentatricopeptide repeat-containing protein At1g62350 
 gma-u.5   100807089   pentatricopeptide repeat-containing protein At1g62350 
 gma-u.5   100802082   pentatricopeptide repeat-containing protein At1g62350 
 mtr-u.5   120579606   pentatricopeptide repeat-containing protein At1g62350 
 mtr-u.5   11422506   pentatricopeptide repeat-containing protein At1g62350 
 mtr-u.5   11429038   pentatricopeptide repeat-containing protein At1g62350 
 ppo-u.5   7480118   pentatricopeptide repeat-containing protein At1g62350 
 ath-u.5   AT1G62350   Pentatricopeptide repeat (PPR) superfamily protein 
 vvi-u.5   100262019   pentatricopeptide repeat-containing protein At1g62350 
 sly-u.5   101267041   pentatricopeptide repeat-containing protein At1g62350 
 osa-u.5   4332549   pentatricopeptide repeat-containing protein At1g62350 
 zma-u.5   100217295   uncharacterized LOC100217295 

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Top 50 coexpressed genes to 100782220 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100782220 (gma-u.5 coexpression data)

CoexMap"100782220"


gmaLOC100782220 | Entrez gene ID : 100782220      
Species gma mtr ppo ath vvi sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 5 3 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (7243 genes)  IEA  
Protein XP_003552899.1 [sequence] [blastp]
XP_014626750.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  chlo_mito 6,  mito 4  (predict for XP_003552899.1)
cyto 6,  cyto_E.R. 4,  cyto_nucl 4,  chlo 1,  E.R. 1  (predict for XP_014626750.1)
Subcellular
localization
TargetP
mito 6,  chlo 4  (predict for XP_003552899.1)
other 7,  mito 3  (predict for XP_014626750.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100782220

.
gma-r.7
for
100782220

.
gma-m.5
for
100782220

.
gma-u.5
for
100807089

.
gma-u.5
for
100802082

.
mtr-u.5
for
120579606

.
mtr-u.5
for
11422506

.
mtr-u.5
for
11429038

.
ppo-u.5
for
7480118

.
ath-u.5
for
AT1G62350

.
vvi-u.5
for
100262019

.
sly-u.5
for
101267041

.
osa-u.5
for
4332549

.
zma-u.5
for
100217295

.


Ortholog ID: 8750
Species ath gma gma sly osa zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot sot cit bdi nta nta
Symbol AT1G62350 LOC100802082 LOC100782220 LOC101267041 LOC4332549 LOC100217295 LOC103871540 LOC100262019 LOC7480118 LOC120579606 LOC11422506 LOC123085616 LOC123097739 LOC123448872 LOC121225322 LOC107939445 LOC106346371 LOC106412024 LOC110433504 LOC102596247 LOC102601175 LOC102628494 LOC100821240 LOC107788471 LOC107822580
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 uncharacterized LOC100217295 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350-like pentatricopeptide repeat-containing protein At1g62350-like pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350-like pentatricopeptide repeat-containing protein At1g62350-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma03040 Spliceosome 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi03015 mRNA surveillance pathway 3
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03083 Polycomb repressive complex 2
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 3
ppo03420 Nucleotide excision repair 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00062 Fatty acid elongation 4
ghi04626 Plant-pathogen interaction 4
ghi00510 N-Glycan biosynthesis 3
ghi00513 Various types of N-glycan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00062 Fatty acid elongation 4
ghi04626 Plant-pathogen interaction 4
ghi00510 N-Glycan biosynthesis 3
ghi00513 Various types of N-glycan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 3
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 6
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit03020 RNA polymerase 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842533 100802082 100782220 101267041 4332549 100217295 103871540 100262019 7480118 120579606 11422506 123085616 123097739 123448872 121225322 107939445 106346371 106412024 110433504 102596247 102601175 102628494 100821240 107788471 107822580
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