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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT1G62350   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-r.7   AT1G62350   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.9   AT1G62350   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-e.2   AT1G62350   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.bio   AT1G62350   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.hor   AT1G62350   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.lig   AT1G62350   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.str   AT1G62350   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.tis   AT1G62350   Pentatricopeptide repeat (PPR) superfamily protein 
 bra-r.6   103871540   pentatricopeptide repeat-containing protein At1g62350 
 bna-r.1   106346371   pentatricopeptide repeat-containing protein At1g62350 
 bna-r.1   106412024   pentatricopeptide repeat-containing protein At1g62350 
 ghi-r.1   121225322   pentatricopeptide repeat-containing protein At1g62350 
 ghi-r.1   107939445   pentatricopeptide repeat-containing protein At1g62350 
 cit-r.1   102628494   pentatricopeptide repeat-containing protein At1g62350 
 gma-u.5   100802082   pentatricopeptide repeat-containing protein At1g62350 
 gma-u.5   100807089   pentatricopeptide repeat-containing protein At1g62350 
 gma-u.5   100782220   pentatricopeptide repeat-containing protein At1g62350 
 vvi-u.5   100262019   pentatricopeptide repeat-containing protein At1g62350 
 ppo-u.5   7480118   pentatricopeptide repeat-containing protein At1g62350 
 mtr-u.5   11422506   pentatricopeptide repeat-containing protein At1g62350 
 mtr-u.5   11429038   pentatricopeptide repeat-containing protein At1g62350 
 mtr-u.5   120579606   pentatricopeptide repeat-containing protein At1g62350 
 sly-u.5   101267041   pentatricopeptide repeat-containing protein At1g62350 
 sot-r.1   102601175   pentatricopeptide repeat-containing protein At1g62350-like 
 sot-r.1   102596247   pentatricopeptide repeat-containing protein At1g62350-like 
 nta-r.1   107822580   pentatricopeptide repeat-containing protein At1g62350-like 
 nta-r.1   107788471   pentatricopeptide repeat-containing protein At1g62350-like 
 osa-u.5   4332549   pentatricopeptide repeat-containing protein At1g62350 
 zma-u.5   100217295   uncharacterized LOC100217295 
 tae-r.2   123097739   pentatricopeptide repeat-containing protein At1g62350 
 tae-r.2   123092412   pentatricopeptide repeat-containing protein At1g62350 
 tae-r.2   123085616   pentatricopeptide repeat-containing protein At1g62350 
 hvu-r.1   123448872   pentatricopeptide repeat-containing protein At1g62350 
 sbi-r.1   110433504   pentatricopeptide repeat-containing protein At1g62350 
 bdi-r.1   100821240   pentatricopeptide repeat-containing protein At1g62350 

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Top 50 coexpressed genes to AT1G62350 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G62350 (ath-u.5 coexpression data)

CoexMap"842533"


athAT1G62350 | Entrez gene ID : 842533      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 3 1 1 3 1 2 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001322035.1 [sequence] [blastp]
NP_001322036.1 [sequence] [blastp]
NP_176425.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 1,  mito 1,  plas 1,  extr 1,  cyto_nucl 1,  cyto_mito 1,  cysk_nucl 1  (predict for NP_001322035.1)
chlo 5,  nucl 2,  cyto_nucl 2,  chlo_mito 2  (predict for NP_001322036.1)
cyto 4,  chlo 2,  cyto_pero 2,  nucl 1  (predict for NP_176425.2)
Subcellular
localization
TargetP
mito 5  (predict for NP_001322035.1)
other 6,  mito 6  (predict for NP_001322036.1)
other 4,  mito 3  (predict for NP_176425.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT1G62350
ath-r.7
for
AT1G62350
ath-m.9
for
AT1G62350
ath-e.2
for
AT1G62350
ath-m.4.bio
for
AT1G62350
ath-m.4.hor
for
AT1G62350
ath-m.4.lig
for
AT1G62350
ath-m.4.str
for
AT1G62350
ath-m.4.tis
for
AT1G62350
bra-r.6
for
103871540
bna-r.1
for
106346371
bna-r.1
for
106412024
ghi-r.1
for
121225322
ghi-r.1
for
107939445
cit-r.1
for
102628494
gma-u.5
for
100802082
gma-u.5
for
100807089
gma-u.5
for
100782220
vvi-u.5
for
100262019
ppo-u.5
for
7480118
mtr-u.5
for
11422506
mtr-u.5
for
11429038
mtr-u.5
for
120579606
sly-u.5
for
101267041
sot-r.1
for
102601175
sot-r.1
for
102596247
nta-r.1
for
107822580
nta-r.1
for
107788471
osa-u.5
for
4332549
zma-u.5
for
100217295
tae-r.2
for
123097739
tae-r.2
for
123092412
tae-r.2
for
123085616
hvu-r.1
for
123448872
sbi-r.1
for
110433504
bdi-r.1
for
100821240


Ortholog ID: 8750
Species ath bra bna bna ghi ghi cit gma gma gma vvi ppo mtr mtr mtr sly sot sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol AT1G62350 LOC103871540 LOC106346371 LOC106412024 LOC121225322 LOC107939445 LOC102628494 LOC100802082 LOC100807089 LOC100782220 LOC100262019 LOC7480118 LOC11422506 LOC11429038 LOC120579606 LOC101267041 LOC102601175 LOC102596247 LOC107822580 LOC107788471 LOC4332549 LOC100217295 LOC123097739 LOC123092412 LOC123085616 LOC123448872 LOC110433504 LOC100821240
Function* Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350-like pentatricopeptide repeat-containing protein At1g62350-like pentatricopeptide repeat-containing protein At1g62350-like pentatricopeptide repeat-containing protein At1g62350-like pentatricopeptide repeat-containing protein At1g62350 uncharacterized LOC100217295 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350 pentatricopeptide repeat-containing protein At1g62350
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 3
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03060 Protein export 6
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00062 Fatty acid elongation 4
ghi04626 Plant-pathogen interaction 4
ghi00510 N-Glycan biosynthesis 3
ghi00513 Various types of N-glycan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00062 Fatty acid elongation 4
ghi04626 Plant-pathogen interaction 4
ghi00510 N-Glycan biosynthesis 3
ghi00513 Various types of N-glycan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit03020 RNA polymerase 2
cit03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma03040 Spliceosome 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi03015 mRNA surveillance pathway 3
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03083 Polycomb repressive complex 2
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 3
ppo03420 Nucleotide excision repair 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
bdi03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842533 103871540 106346371 106412024 121225322 107939445 102628494 100802082 100807089 100782220 100262019 7480118 11422506 11429038 120579606 101267041 102601175 102596247 107822580 107788471 4332549 100217295 123097739 123092412 123085616 123448872 110433504 100821240
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