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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100786828   60S ribosomal protein L4 
 gma-r.7   100786828   60S ribosomal protein L4 
 gma-m.5   100786828   60S ribosomal protein L4 
 gma-u.5   100796712   60S ribosomal protein L4 
 gma-u.5   100779764   60S ribosomal protein L4 
 gma-u.5   100819636   60S ribosomal protein L4 
 mtr-u.5   11406297   60S ribosomal protein L4 
 mtr-u.5   25484054   60S ribosomal protein L4 
 mtr-u.5   11425489   60S ribosomal protein L4 
 ppo-u.5   18100242   60S ribosomal protein L4 
 ppo-u.5   7465290   60S ribosomal protein L4 
 ppo-u.5   18100240   60S ribosomal protein L4 
 ath-u.5   AT3G09630   Ribosomal protein L4/L1 family 
 ath-u.5   AT5G02870   Ribosomal protein L4/L1 family 
 vvi-u.5   100255110   large ribosomal subunit protein uL4 
 vvi-u.5   100257994   large ribosomal subunit protein uL4-like 
 vvi-u.5   100251826   large ribosomal subunit protein uL4 
 sly-u.5   101253641   large ribosomal subunit protein uL4z 
 sly-u.5   101253039   large ribosomal subunit protein uL4z 
 sly-u.5   101259570   large ribosomal subunit protein uL4 
 osa-u.5   4342563   large ribosomal subunit protein uL4z 
 osa-u.5   9272589   large ribosomal subunit protein uL4 
 zma-u.5   100191314   60S ribosomal protein L4-like 
 zma-u.5   100191607   60S ribosomal protein L4-like 
 zma-u.5   100382075   60S ribosomal protein L4-like 

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Top 50 coexpressed genes to 100786828 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100786828 (gma-u.5 coexpression data)

CoexMap"100786828"


gmaLOC100786828 | Entrez gene ID : 100786828      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 3 3 2 3 3 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03010 [list] [network] Ribosome (1072 genes)
GO BP
GO:0006412 [list] [network] translation  (852 genes)  IEA  
GO CC
GO:0022625 [list] [network] cytosolic large ribosomal subunit  (230 genes)  IEA  
GO:0005840 [list] [network] ribosome  (633 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (610 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (2019 genes)  IEA  
Protein XP_003537248.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 4,  cyto_nucl 4  (predict for XP_003537248.1)
Subcellular
localization
TargetP
other 5  (predict for XP_003537248.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100786828

.
gma-r.7
for
100786828

.
gma-m.5
for
100786828

.
gma-u.5
for
100796712

.
gma-u.5
for
100779764

.
gma-u.5
for
100819636

.
mtr-u.5
for
11406297

.
mtr-u.5
for
25484054

.
mtr-u.5
for
11425489

.
ppo-u.5
for
18100242

.
ppo-u.5
for
7465290

.
ppo-u.5
for
18100240

.
ath-u.5
for
AT3G09630

.
ath-u.5
for
AT5G02870

.
vvi-u.5
for
100255110

.
vvi-u.5
for
100257994

.
vvi-u.5
for
100251826

.
sly-u.5
for
101253641

.
sly-u.5
for
101253039

.
sly-u.5
for
101259570

.
osa-u.5
for
4342563

.
osa-u.5
for
9272589

.
zma-u.5
for
100191314

.
zma-u.5
for
100191607

.
zma-u.5
for
100382075

.


Ortholog ID: 1801
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi nta nta
Symbol AT5G02870 AT3G09630 LOC100796712 LOC100786828 LOC101253641 LOC101259570 LOC9272589 LOC4342563 LOC100280657 LOC100191314 LOC103870529 LOC103859287 LOC100255110 LOC100251826 LOC18100240 LOC18100242 LOC25484054 LOC11425489 LOC123105403 LOC123133840 LOC123452705 LOC123449583 LOC107948336 LOC107898498 LOC106372610 LOC106448658 CHLRE_09g397697v5 LOC110432557 LOC8081259 LOC102577718 LOC102604998 LOC102619515 LOC102620368 LOC100845116 LOC107759872 LOC107779688
Function* Ribosomal protein L4/L1 family Ribosomal protein L4/L1 family 60S ribosomal protein L4 60S ribosomal protein L4 large ribosomal subunit protein uL4z large ribosomal subunit protein uL4 large ribosomal subunit protein uL4 large ribosomal subunit protein uL4z 60S ribosomal protein L4-like 60S ribosomal protein L4-like 60S ribosomal protein L4-1 60S ribosomal protein L4-1 large ribosomal subunit protein uL4 large ribosomal subunit protein uL4 60S ribosomal protein L4 60S ribosomal protein L4 60S ribosomal protein L4 60S ribosomal protein L4 60S ribosomal protein L4-1 60S ribosomal protein L4-1 60S ribosomal protein L4-1-like 60S ribosomal protein L4-1-like 60S ribosomal protein L4 60S ribosomal protein L4 60S ribosomal protein L4-2-like 60S ribosomal protein L4-1-like ribosomal protein L4 60S ribosomal protein L4-1-like 60S ribosomal protein L4-1 uncharacterized LOC102577718 60S ribosomal protein L4-1-like 60S ribosomal protein L4-like 60S ribosomal protein L4 60S ribosomal protein L4-1 large ribosomal subunit protein uL4 large ribosomal subunit protein uL4z
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 7
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 13
sly00261 Monobactam biosynthesis 2
sly00300 Lysine biosynthesis 2
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 11
zma00270 Cysteine and methionine metabolism 3
zma00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 8
bra03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 11
vvi04120 Ubiquitin mediated proteolysis 2
vvi03040 Spliceosome 2
vvi00230 Purine metabolism 2
vvi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo01230 Biosynthesis of amino acids 3
ppo00270 Cysteine and methionine metabolism 2
ppo00260 Glycine, serine and threonine metabolism 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo00270 Cysteine and methionine metabolism 2
ppo00260 Glycine, serine and threonine metabolism 2
ppo01230 Biosynthesis of amino acids 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 12
mtr00240 Pyrimidine metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
tae01230 Biosynthesis of amino acids 4
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00770 Pantothenate and CoA biosynthesis 3
tae01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 11
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00770 Pantothenate and CoA biosynthesis 3
tae01210 2-Oxocarboxylic acid metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
ghi00300 Lysine biosynthesis 2
ghi00470 D-Amino acid metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 12
ghi00300 Lysine biosynthesis 2
ghi00470 D-Amino acid metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 14
cre01230 Biosynthesis of amino acids 3
cre03013 Nucleocytoplasmic transport 2
cre00220 Arginine biosynthesis 2
cre00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 18
sbi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 14
sot00261 Monobactam biosynthesis 2
sot00300 Lysine biosynthesis 2
sot01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 5
cit01230 Biosynthesis of amino acids 4
cit00670 One carbon pool by folate 3
cit00290 Valine, leucine and isoleucine biosynthesis 2
cit00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
cit01230 Biosynthesis of amino acids 5
cit01210 2-Oxocarboxylic acid metabolism 3
cit00270 Cysteine and methionine metabolism 3
cit00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 8
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 13
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831756 820120 100796712 100786828 101253641 101259570 9272589 4342563 100280657 100191314 103870529 103859287 100255110 100251826 18100240 18100242 25484054 11425489 123105403 123133840 123452705 123449583 107948336 107898498 106372610 106448658 5720364 110432557 8081259 102577718 102604998 102619515 102620368 100845116 107759872 107779688
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