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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100788470   carbamoyl-phosphate synthase small chain-like 
 gma-r.7   100788470   carbamoyl-phosphate synthase small chain-like 
 gma-u.5   100806168   carbamoyl-phosphate synthase small chain, chloroplastic 
 gma-u.5   100776931   carbamoyl-phosphate synthase small chain, chloroplastic 
 mtr-u.5   11407155   carbamoyl-phosphate synthase small chain, chloroplastic 
 mtr-u.5   11424976   carbamoyl-phosphate synthase small chain, chloroplastic 
 ppo-u.5   7461992   carbamoyl-phosphate synthase small chain, chloroplastic 
 ppo-u.5   18094578   carbamoyl-phosphate synthase small chain, chloroplastic 
 ath-u.5   CARA   carbamoyl phosphate synthetase A 
 vvi-u.5   100255702   anthranilate synthase 02 
 sly-u.5   101258052   carbamoyl phosphate synthase small chain, chloroplastic 
 osa-u.5   4330474   carbamoyl-phosphate synthase small chain, chloroplastic-like 
 zma-u.5   100273931   carbamoyl-phosphate synthase small chain 
 zma-u.5   100193467   uncharacterized LOC100193467 

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Top 50 coexpressed genes to 100788470 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100788470 (gma-u.5 coexpression data)

CoexMap"100788470"


gmaLOC100788470 | Entrez gene ID : 100788470      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 2 1 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx00220 [list] [network] Arginine biosynthesis (61 genes)
gmx00240 [list] [network] Pyrimidine metabolism (120 genes)
gmx00250 [list] [network] Alanine, aspartate and glutamate metabolism (92 genes)
gmx01240 [list] [network] Biosynthesis of cofactors (475 genes)
GO BP
GO:0006207 [list] [network] 'de novo' pyrimidine nucleobase biosynthetic process  (17 genes)  IEA  
GO:0006526 [list] [network] L-arginine biosynthetic process  (19 genes)  IEA  
GO:0006541 [list] [network] glutamine metabolic process  (19 genes)  IEA  
GO CC
GO:0005951 [list] [network] carbamoyl-phosphate synthase complex  (3 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0004088 [list] [network] carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity  (5 genes)  IEA  
Protein NP_001241589.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 4  (predict for NP_001241589.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001241589.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100788470

.
gma-r.7
for
100788470

.
gma-u.5
for
100806168

.
gma-u.5
for
100776931

.
mtr-u.5
for
11407155

.
mtr-u.5
for
11424976

.
ppo-u.5
for
7461992

.
ppo-u.5
for
18094578

.
ath-u.5
for
CARA

.
vvi-u.5
for
100255702

.
sly-u.5
for
101258052

.
osa-u.5
for
4330474

.
zma-u.5
for
100273931

.
zma-u.5
for
100193467

.


Ortholog ID: 6008
Species ath gma gma sly osa zma zma bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol CARA LOC100806168 LOC100776931 LOC101258052 LOC4330474 LOC100273931 LOC100193467 LOC103831356 LOC100255702 LOC7461992 LOC18094578 LOC11407155 LOC11424976 LOC123111435 LOC123103246 LOC123394976 LOC107899531 LOC107890357 LOC106406783 LOC106435229 CHLRE_06g308500v5 LOC8073153 LOC102604705 LOC102589678 LOC102620935 LOC100834202 LOC107778194 LOC107793380
Function* carbamoyl phosphate synthetase A carbamoyl-phosphate synthase small chain, chloroplastic carbamoyl-phosphate synthase small chain, chloroplastic carbamoyl phosphate synthase small chain, chloroplastic carbamoyl-phosphate synthase small chain, chloroplastic-like carbamoyl-phosphate synthase small chain uncharacterized LOC100193467 carbamoyl-phosphate synthase small chain, chloroplastic anthranilate synthase 02 carbamoyl-phosphate synthase small chain, chloroplastic carbamoyl-phosphate synthase small chain, chloroplastic carbamoyl-phosphate synthase small chain, chloroplastic carbamoyl-phosphate synthase small chain, chloroplastic carbamoyl-phosphate synthase small chain, chloroplastic carbamoyl-phosphate synthase small chain, chloroplastic carbamoyl-phosphate synthase small chain, chloroplastic carbamoyl-phosphate synthase small chain, chloroplastic carbamoyl-phosphate synthase small chain, chloroplastic carbamoyl-phosphate synthase small chain, chloroplastic carbamoyl-phosphate synthase small chain, chloroplastic uncharacterized protein carbamoyl-phosphate synthase small chain, chloroplastic carbamoyl-phosphate synthase small chain, chloroplastic-like carbamoyl-phosphate synthase small chain, chloroplastic-like carbamoyl-phosphate synthase small chain, chloroplastic carbamoyl-phosphate synthase small chain, chloroplastic carbamoyl phosphate synthase small chain, chloroplastic carbamoyl-phosphate synthase small chain, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 7
ath01240 Biosynthesis of cofactors 5
ath03010 Ribosome 4
ath00300 Lysine biosynthesis 4
ath00240 Pyrimidine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 4
gma00290 Valine, leucine and isoleucine biosynthesis 3
gma00650 Butanoate metabolism 3
gma00660 C5-Branched dibasic acid metabolism 3
gma00770 Pantothenate and CoA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 3
gma00010 Glycolysis / Gluconeogenesis 2
gma00620 Pyruvate metabolism 2
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 3
sly00970 Aminoacyl-tRNA biosynthesis 2
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 7
osa00300 Lysine biosynthesis 5
osa00230 Purine metabolism 4
osa01240 Biosynthesis of cofactors 3
osa00261 Monobactam biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 6
zma00220 Arginine biosynthesis 2
zma00240 Pyrimidine metabolism 2
zma00250 Alanine, aspartate and glutamate metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 10
zma00340 Histidine metabolism 4
zma00220 Arginine biosynthesis 3
zma00250 Alanine, aspartate and glutamate metabolism 3
zma00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 5
bra00230 Purine metabolism 4
bra03010 Ribosome 4
bra01240 Biosynthesis of cofactors 3
bra00290 Valine, leucine and isoleucine biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 13
vvi00220 Arginine biosynthesis 2
vvi00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
ppo03040 Spliceosome 2
ppo00220 Arginine biosynthesis 2
ppo00250 Alanine, aspartate and glutamate metabolism 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 3
ppo03040 Spliceosome 2
ppo03013 Nucleocytoplasmic transport 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00220 Arginine biosynthesis 2
mtr00240 Pyrimidine metabolism 2
mtr00250 Alanine, aspartate and glutamate metabolism 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 4
mtr01210 2-Oxocarboxylic acid metabolism 3
mtr00270 Cysteine and methionine metabolism 2
mtr00290 Valine, leucine and isoleucine biosynthesis 2
mtr00660 C5-Branched dibasic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00220 Arginine biosynthesis 6
tae00240 Pyrimidine metabolism 6
tae00250 Alanine, aspartate and glutamate metabolism 6
tae01240 Biosynthesis of cofactors 6
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00240 Pyrimidine metabolism 8
tae01240 Biosynthesis of cofactors 8
tae00220 Arginine biosynthesis 6
tae00250 Alanine, aspartate and glutamate metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 3
hvu00030 Pentose phosphate pathway 2
hvu01200 Carbon metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 6
ghi01240 Biosynthesis of cofactors 6
ghi00220 Arginine biosynthesis 4
ghi00250 Alanine, aspartate and glutamate metabolism 4
ghi00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 6
ghi01240 Biosynthesis of cofactors 6
ghi00220 Arginine biosynthesis 4
ghi00250 Alanine, aspartate and glutamate metabolism 4
ghi00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 4
bna00240 Pyrimidine metabolism 4
bna00250 Alanine, aspartate and glutamate metabolism 4
bna01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 4
bna00240 Pyrimidine metabolism 4
bna00250 Alanine, aspartate and glutamate metabolism 4
bna01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00220 Arginine biosynthesis 9
cre01230 Biosynthesis of amino acids 7
cre00250 Alanine, aspartate and glutamate metabolism 5
cre01210 2-Oxocarboxylic acid metabolism 4
cre00230 Purine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi00300 Lysine biosynthesis 2
sbi01230 Biosynthesis of amino acids 2
sbi01240 Biosynthesis of cofactors 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 12
sot00220 Arginine biosynthesis 3
sot00250 Alanine, aspartate and glutamate metabolism 3
sot01240 Biosynthesis of cofactors 3
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
sot01230 Biosynthesis of amino acids 3
sot00220 Arginine biosynthesis 3
sot00250 Alanine, aspartate and glutamate metabolism 3
sot00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
cit01240 Biosynthesis of cofactors 3
cit00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 3
bdi03013 Nucleocytoplasmic transport 2
bdi00240 Pyrimidine metabolism 2
bdi00300 Lysine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 7
nta00250 Alanine, aspartate and glutamate metabolism 5
nta01240 Biosynthesis of cofactors 5
nta03040 Spliceosome 4
nta03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00250 Alanine, aspartate and glutamate metabolism 5
nta01240 Biosynthesis of cofactors 5
nta00230 Purine metabolism 3
nta01232 Nucleotide metabolism 3
nta00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822396 100806168 100776931 101258052 4330474 100273931 100193467 103831356 100255702 7461992 18094578 11407155 11424976 123111435 123103246 123394976 107899531 107890357 106406783 106435229 5716840 8073153 102604705 102589678 102620935 100834202 107778194 107793380
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