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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100792248   mediator of RNA polymerase II transcription subunit 6 
 gma-r.7   100792248   mediator of RNA polymerase II transcription subunit 6 
 gma-m.5   100792248   mediator of RNA polymerase II transcription subunit 6 
 gma-u.5   106799203   mediator of RNA polymerase II transcription subunit 6 
 mtr-u.5   25500369   mediator of RNA polymerase II transcription subunit 6 
 ath-u.5   MED6   RNA polymerase transcriptional regulation mediator-like protein 
 vvi-u.5   100253150   mediator of RNA polymerase II transcription subunit 6 
 sly-u.5   101250585   mediator of RNA polymerase II transcription subunit 6 
 sly-u.5   101249154   mediator of RNA polymerase II transcription subunit 6 
 osa-u.5   4340496   mediator of RNA polymerase II transcription subunit 6 
 zma-u.5   100279775   uncharacterized LOC100279775 

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Top 50 coexpressed genes to 100792248 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100792248 (gma-u.5 coexpression data)

CoexMap"100792248"


gmaLOC100792248 | Entrez gene ID : 100792248      
Species gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi ppo sot tae bna ghi
Paralog 4 1 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (844 genes)  IEA  
GO CC
GO:0070847 [list] [network] core mediator complex  (16 genes)  IEA  
GO:0016592 [list] [network] mediator complex  (75 genes)  IEA  
GO MF
GO:0003713 [list] [network] transcription coactivator activity  (60 genes)  IEA  
Protein XP_003531638.1 [sequence] [blastp]
XP_006585556.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  mito 4,  chlo 1,  cyto 1,  extr 1  (predict for XP_003531638.1)
nucl 4,  mito 4,  chlo 1,  cyto 1,  extr 1  (predict for XP_006585556.1)
Subcellular
localization
TargetP
other 9  (predict for XP_003531638.1)
other 9  (predict for XP_006585556.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100792248

.
gma-r.7
for
100792248

.
gma-m.5
for
100792248

.
gma-u.5
for
106799203

.
mtr-u.5
for
25500369

.
ath-u.5
for
MED6

.
vvi-u.5
for
100253150

.
sly-u.5
for
101250585

.
sly-u.5
for
101249154

.
osa-u.5
for
4340496

.
zma-u.5
for
100279775

.


Ortholog ID: 8476
Species ath gma gma sly sly osa zma bra vvi mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol MED6 LOC106799203 LOC100792248 LOC101250585 LOC101249154 LOC4340496 LOC100279775 LOC103869179 LOC100253150 LOC25500369 LOC123165554 LOC123159669 LOC123410497 LOC107958045 LOC107916333 LOC106446006 LOC125603028 CHLRE_11g467659v5 LOC8080033 LOC102601226 LOC102622399 LOC100821382 LOC107793285 LOC107782641
Function* RNA polymerase transcriptional regulation mediator-like protein mediator of RNA polymerase II transcription subunit 6 mediator of RNA polymerase II transcription subunit 6 mediator of RNA polymerase II transcription subunit 6 mediator of RNA polymerase II transcription subunit 6 mediator of RNA polymerase II transcription subunit 6 uncharacterized LOC100279775 mediator of RNA polymerase II transcription subunit 6 mediator of RNA polymerase II transcription subunit 6 mediator of RNA polymerase II transcription subunit 6 mediator of RNA polymerase II transcription subunit 6 mediator of RNA polymerase II transcription subunit 6 mediator of RNA polymerase II transcription subunit 6 mediator of RNA polymerase II transcription subunit 6 mediator of RNA polymerase II transcription subunit 6 mediator of RNA polymerase II transcription subunit 6 mediator of RNA polymerase II transcription subunit 6-like uncharacterized protein mediator of RNA polymerase II transcription subunit 6 mediator of RNA polymerase II transcription subunit 6 mediator of RNA polymerase II transcription subunit 6 mediator of RNA polymerase II transcription subunit 6 mediator of RNA polymerase II transcription subunit 6 mediator of RNA polymerase II transcription subunit 6-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 3
gma01240 Biosynthesis of cofactors 2
gma00430 Taurine and hypotaurine metabolism 2
gma00460 Cyanoamino acid metabolism 2
gma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03410 Base excision repair 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 3
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03420 Nucleotide excision repair 3
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 2
hvu03420 Nucleotide excision repair 2
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 5
sot03040 Spliceosome 4
sot04141 Protein processing in endoplasmic reticulum 3
sot03013 Nucleocytoplasmic transport 2
sot03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 7
cit03083 Polycomb repressive complex 5
cit04141 Protein processing in endoplasmic reticulum 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04136 Autophagy - other 3
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821689 106799203 100792248 101250585 101249154 4340496 100279775 103869179 100253150 25500369 123165554 123159669 123410497 107958045 107916333 106446006 125603028 5724354 8080033 102601226 102622399 100821382 107793285 107782641
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