ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	100791327	protein RTF1 homolog
gma-u.5	100793184	protein RTF1 homolog
mtr-u.5	25493202	protein RTF1 homolog
mtr-u.5	25491764	protein RTF1 homolog
mtr-u.5	11421691	protein RTF1 homolog
ppo-u.5	7490816	protein RTF1 homolog
ppo-u.5	7485448	protein RTF1 homolog
ath-u.5	VIP5	plus-3 domain-containing protein
vvi-u.5	100854406	protein RTF1 homolog
sly-u.5	101265395	protein RTF1 homolog
osa-u.5	4352419	protein RTF1 homolog
zma-u.5	100279254	Protein RTF1-like protein
zma-u.5	100382503	uncharacterized LOC100382503

functional annotation

KEGG

GO BP

GO CC

GO:0016593 [list] [network] Cdc73/Paf1 complex

(16 genes)

IEA

GO MF

GO:1990269 [list] [network] RNA polymerase II C-terminal domain phosphoserine binding	(9 genes)	IEA
GO:0003677 [list] [network] DNA binding	(3517 genes)	IEA

Protein

XP_003521660.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for XP_003521660.1)

Subcellular
localization
TargetP

chlo 6, other 6

(predict for XP_003521660.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100791327	gma-u.5 for 100793184	mtr-u.5 for 25493202	mtr-u.5 for 25491764	mtr-u.5 for 11421691	ppo-u.5 for 7490816	ppo-u.5 for 7485448	ath-u.5 for VIP5	vvi-u.5 for 100854406	sly-u.5 for 101265395	osa-u.5 for 4352419	zma-u.5 for 100279254	zma-u.5 for 100382503

Ortholog ID: 6428

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

VIP5

Function^*

protein RTF1 homolog

plus-3 domain-containing protein

protein RTF1 homolog

uncharacterized LOC100382503

Protein RTF1-like protein

protein RTF1 homolog

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03030	DNA replication	3
gma04120	Ubiquitin mediated proteolysis	2
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00760	Nicotinate and nicotinamide metabolism	2
bna01240	Biosynthesis of cofactors	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3
cit00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5
sot03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta04016	MAPK signaling pathway - plant	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	7
nta04016	MAPK signaling pathway - plant	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	7
tae03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	6
tae03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	4
cre03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

100791327

100793184

25491764

25493202

7490816

7485448

842395

103830303

100854406

107925157

107937765

111205238

106406293

102625656

101265395

102602709

107774211

107766625

4352419

100382503

100279254

123110823

123102640

123452789

8067239

104584385

100821735

5718762

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100791327 (gma-u.5 coexpression data)

Top 50 enrichment test to 100791327 (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	vvi	sly	osa	zma	hvu	bna	cit	bra	ghi	sbi	bdi	nta	tae	cre	sot
Paralog	2	3	2	1	1	1	1	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100791327 (gma-u.5 coexpression data)

Top 50 enrichment test to 100791327 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**