ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100795054	regulation of nuclear pre-mRNA domain-containing protein 1B
gma-r.7	100795054	regulation of nuclear pre-mRNA domain-containing protein 1B
gma-u.5	100791478	wiskott-Aldrich syndrome protein homolog 1
gma-u.5	100802429	regulation of nuclear pre-mRNA domain-containing protein 1B
gma-u.5	100806108	regulation of nuclear pre-mRNA domain-containing protein 1A
mtr-u.5	11422191	regulation of nuclear pre-mRNA domain-containing protein 1B
mtr-u.5	11427699	regulation of nuclear pre-mRNA domain-containing protein 1A
mtr-u.5	11442951	regulation of nuclear pre-mRNA domain-containing protein 1A
ppo-u.5	7456257	UPF0400 protein C337.03
ppo-u.5	18100965	uncharacterized LOC18100965
ppo-u.5	7477107	uncharacterized LOC7477107
ath-u.5	AT3G26990	ENTH/VHS family protein
ath-u.5	AT5G10060	ENTH/VHS family protein
ath-u.5	AT5G65180	ENTH/VHS family protein
vvi-u.5	100257727	uncharacterized LOC100257727
vvi-u.5	100250127	uncharacterized LOC100250127
vvi-u.5	100250806	uncharacterized LOC100250806
sly-u.5	101266382	uncharacterized LOC101266382
sly-u.5	101245837	uncharacterized LOC101245837
sly-u.5	101261976	uncharacterized LOC101261976
osa-u.5	4349670	uncharacterized LOC4349670
osa-u.5	4337145	uncharacterized LOC4337145
osa-u.5	4351389	UPF0400 protein C337.03
zma-u.5	100384037	zinc finger homeobox protein 4
zma-u.5	100278822	uncharacterized LOC100278822
zma-u.5	100273784	ENTH/VHS family protein

Top 50 coexpressed genes to 100795054 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100795054 (gma-u.5 coexpression data)

CoexMap"100795054"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0031124 [list] [network] mRNA 3'-end processing

(26 genes)

IEA

GO CC

GO MF

GO:0000993 [list] [network] RNA polymerase II complex binding

(35 genes)

IEA

Protein

XP_006585294.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 3

(predict for XP_006585294.1)

Subcellular
localization
TargetP

other 4

(predict for XP_006585294.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100795054	gma-r.7 for 100795054	gma-u.5 for 100791478	gma-u.5 for 100802429	gma-u.5 for 100806108	mtr-u.5 for 11422191	mtr-u.5 for 11427699	mtr-u.5 for 11442951	ppo-u.5 for 7456257	ppo-u.5 for 18100965	ppo-u.5 for 7477107	ath-u.5 for AT3G26990	ath-u.5 for AT5G10060	ath-u.5 for AT5G65180	vvi-u.5 for 100257727	vvi-u.5 for 100250127	vvi-u.5 for 100250806	sly-u.5 for 101266382	sly-u.5 for 101245837	sly-u.5 for 101261976	osa-u.5 for 4349670	osa-u.5 for 4337145	osa-u.5 for 4351389	zma-u.5 for 100384037	zma-u.5 for 100278822	zma-u.5 for 100273784

Ortholog

Ortholog ID: 1017

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

regulation of nuclear pre-mRNA domain-containing protein 1A

uncharacterized LOC100815709

regulation of nuclear pre-mRNA domain-containing protein 1A

UPF0400 protein C337.03

uncharacterized LOC7477107

ENTH/VHS family protein

regulation of nuclear pre-mRNA domain-containing protein 1B

regulation of nuclear pre-mRNA domain-containing protein 1A

uncharacterized LOC100250127

uncharacterized LOC100249768

regulation of nuclear pre-mRNA domain-containing protein 1B

regulation of nuclear pre-mRNA domain-containing protein 1A

regulation of nuclear pre-mRNA domain-containing protein 1A-like

uncharacterized LOC102628356

uncharacterized LOC102614365

uncharacterized LOC101245837

uncharacterized LOC101261976

uncharacterized LOC102584323

regulation of nuclear pre-mRNA domain-containing protein 1B

uncharacterized LOC107787582

uncharacterized LOC107825766

uncharacterized LOC4327230

UPF0400 protein C337.03

uncharacterized LOC100275719

zinc finger homeobox protein 4

regulation of nuclear pre-mRNA domain-containing protein 1A

regulation of nuclear pre-mRNA domain-containing protein 2

UPF0400 protein C337.03-like

protein enabled homolog

regulation of nuclear pre-mRNA domain-containing protein 1A

actin cytoskeleton-regulatory complex protein PAN1

proline-rich protein 36

regulation of nuclear pre-mRNA domain-containing protein 1A

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3
mtr03013	Nucleocytoplasmic transport	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00310	Lysine degradation	2
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	3
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	6
bra03015	mRNA surveillance pathway	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04144	Endocytosis	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	2
sly03040	Spliceosome	2
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04136	Autophagy - other	3
sot03008	Ribosome biogenesis in eukaryotes	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	6
nta04382	Cornified envelope formation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	4
osa03250	Viral life cycle - HIV-1	3
osa03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	2
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	4
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	7
cre03010	Ribosome	2

Expression

Expression pattern

Entrez Gene ID^*

100800067

100815709

11442951

11427699

7456257

7477107

836642

822316

103836971

103850345

100250127

100249768

107948370

107890033

106376974

106384910

102628356

102614365

101245837

101261976

102584323

102580771

107787582

107825766

4327230

4351389

100275719

100384037

123119886

123120431

123445280

123452771

8068447

8083053

100845741

100837105

66055366

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Species	gma	mtr	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	5	3	3	3	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100795054 (gma-u.5 coexpression data)

Top 50 enrichment test to 100795054 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**