ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100798338	alcohol-forming fatty acyl-CoA reductase
gma-r.7	100798338	alcohol-forming fatty acyl-CoA reductase
gma-m.5	100798338	alcohol-forming fatty acyl-CoA reductase
gma-u.5	100805776	fatty acyl-CoA reductase 3
mtr-u.5	11406049	fatty acyl-CoA reductase 3
ppo-u.5	7479040	fatty acyl-CoA reductase 3
ppo-u.5	7474948	fatty acyl-CoA reductase 3
ath-u.5	FAR1	fatty acid reductase 1
bra-r.6	103873656	probable fatty acyl-CoA reductase 5
bra-r.6	103851446	fatty acyl-CoA reductase 1
bra-r.6	103845856	fatty acyl-CoA reductase 2
vvi-u.5	100259719	fatty acyl-CoA reductase 3
ghi-r.1	107889164	alcohol-forming fatty acyl-CoA reductase
ghi-r.1	107961703	fatty acyl-CoA reductase 3
ghi-r.1	107953279	fatty acyl-CoA reductase 3
bna-r.1	106403161	probable fatty acyl-CoA reductase 4
cit-r.1	102617900	fatty acyl-CoA reductase 3-like
sly-u.5	101260757	fatty acyl-CoA reductase 2, chloroplastic-like
sly-u.5	101260469	fatty acyl-CoA reductase 2, chloroplastic-like
nta-r.1	107770654	alcohol-forming fatty acyl-CoA reductase-like
nta-r.1	107765773	fatty acyl-CoA reductase 2, chloroplastic
osa-u.5	4347887	putative fatty acyl-CoA reductase 7
osa-u.5	4335562	fatty acyl-CoA reductase 1
zma-u.5	103643196	fatty acyl-CoA reductase 1
zma-u.5	100272790	uncharacterized LOC100272790
zma-u.5	100285021	male sterility protein 2
tae-r.2	123057499	fatty acyl-CoA reductase 1
tae-r.2	123172904	fatty acyl-CoA reductase 1
hvu-r.1	123412496	fatty acyl-CoA reductase 1-like
sbi-r.1	8072774	fatty acyl-CoA reductase 1
bdi-r.1	100822349	fatty acyl-CoA reductase 1
bdi-r.1	100824003	fatty acyl-CoA reductase 3
bdi-r.1	100842081	fatty acyl-CoA reductase 1
cre-r.1	CHLRE_03g171700v5	uncharacterized protein

Top 50 coexpressed genes to 100798338 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100798338 (gma-u.5 coexpression data)

CoexMap"100798338"

[Cytoscape]

Annotation

functional annotation

KEGG

gmx00073 [list] [network] Cutin, suberine and wax biosynthesis (59 genes)

gmx04146 [list] [network] Peroxisome (156 genes)

GO BP

GO:0010345 [list] [network] suberin biosynthetic process	(12 genes)	IEA
GO:0035336 [list] [network] long-chain fatty-acyl-CoA metabolic process	(12 genes)	IEA

GO CC

GO:0043231 [list] [network] intracellular membrane-bounded organelle

(10455 genes)

IEA

GO MF

GO:0080019 [list] [network] alcohol-forming very long-chain fatty acyl-CoA reductase activity

(12 genes)

IEA

Protein

XP_003539817.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, cyto 3, nucl 1, plas 1, chlo_mito 1, nucl_plas 1, cyto_pero 1

(predict for XP_003539817.1)

Subcellular
localization
TargetP

other 5, scret 3

(predict for XP_003539817.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100798338	gma-r.7 for 100798338	gma-m.5 for 100798338	gma-u.5 for 100805776	mtr-u.5 for 11406049	ppo-u.5 for 7479040	ppo-u.5 for 7474948	ath-u.5 for FAR1	bra-r.6 for 103873656	bra-r.6 for 103851446	bra-r.6 for 103845856	vvi-u.5 for 100259719	ghi-r.1 for 107889164	ghi-r.1 for 107961703	ghi-r.1 for 107953279	bna-r.1 for 106403161	cit-r.1 for 102617900	sly-u.5 for 101260757	sly-u.5 for 101260469	nta-r.1 for 107770654	nta-r.1 for 107765773	osa-u.5 for 4347887	osa-u.5 for 4335562	zma-u.5 for 103643196	zma-u.5 for 100272790	zma-u.5 for 100285021	tae-r.2 for 123057499	tae-r.2 for 123172904	hvu-r.1 for 123412496	sbi-r.1 for 8072774	bdi-r.1 for 100822349	bdi-r.1 for 100824003	bdi-r.1 for 100842081	cre-r.1 for CHLRE_03g171700v5

Ortholog

Ortholog ID: 138

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

FAR5

FAR4

Function^*

fatty acyl-CoA reductase 3

fatty acyl-CoA reductase 2, chloroplastic

alcohol-forming fatty acyl-CoA reductase

fatty acyl-CoA reductase 3

alcohol-forming fatty acyl-CoA reductase

fatty acid reductase 5

fatty acid reductase 4

fatty acyl-CoA reductase 6, chloroplastic

fatty acyl-CoA reductase 3

alcohol-forming fatty acyl-CoA reductase

fatty acyl-CoA reductase 3

fatty acyl-CoA reductase 2, chloroplastic

fatty acyl-CoA reductase 6, chloroplastic

fatty acyl-CoA reductase 3

fatty acyl-CoA reductase 3-like

fatty acyl-CoA reductase 2, chloroplastic

probable fatty acyl-CoA reductase 4

fatty acyl-CoA reductase 3-like

probable fatty acyl-CoA reductase 4

fatty acyl-CoA reductase 2, chloroplastic

fatty acyl-CoA reductase 2-like

alcohol-forming fatty acyl-CoA reductase-like

fatty acyl-CoA reductase 2, chloroplastic

fatty acyl-CoA reductase 3-like

fatty acyl-CoA reductase 1

male sterility protein 2

Fatty acyl-CoA reductase 1

fatty acyl-CoA reductase 2, chloroplastic

probable fatty acyl-CoA reductase 4

alcohol-forming fatty acyl-CoA reductase

fatty acyl-CoA reductase 1-like

fatty acyl-CoA reductase 1

probable fatty acyl-CoA reductase 4

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00073	Cutin, suberine and wax biosynthesis	2
gma04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00073	Cutin, suberine and wax biosynthesis	5
mtr04146	Peroxisome	3
mtr00564	Glycerophospholipid metabolism	2
mtr00062	Fatty acid elongation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00073	Cutin, suberine and wax biosynthesis	4
ppo00062	Fatty acid elongation	3
ppo04626	Plant-pathogen interaction	3
ppo00564	Glycerophospholipid metabolism	2
ppo02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00940	Phenylpropanoid biosynthesis	2
ppo00941	Flavonoid biosynthesis	2
ppo00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00073	Cutin, suberine and wax biosynthesis	4
ath02010	ABC transporters	3
ath04981	Folate transport and metabolism	3
ath04146	Peroxisome	2
ath00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00073	Cutin, suberine and wax biosynthesis	4
ath04146	Peroxisome	2
ath00940	Phenylpropanoid biosynthesis	2
ath02010	ABC transporters	2
ath04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00196	Photosynthesis - antenna proteins	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00073	Cutin, suberine and wax biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00073	Cutin, suberine and wax biosynthesis	2
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00073	Cutin, suberine and wax biosynthesis	2
ghi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00905	Brassinosteroid biosynthesis	2
ghi00073	Cutin, suberine and wax biosynthesis	2
ghi04146	Peroxisome	2
ghi00941	Flavonoid biosynthesis	2
ghi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00940	Phenylpropanoid biosynthesis	3
bna00073	Cutin, suberine and wax biosynthesis	2
bna04146	Peroxisome	2
bna00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00073	Cutin, suberine and wax biosynthesis	5
bna04146	Peroxisome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit02010	ABC transporters	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00073	Cutin, suberine and wax biosynthesis	4
sly04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04146	Peroxisome	3
sly00960	Tropane, piperidine and pyridine alkaloid biosynthesis	2
sly00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	4
nta00073	Cutin, suberine and wax biosynthesis	2
nta04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00073	Cutin, suberine and wax biosynthesis	2
nta04146	Peroxisome	2
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00904	Diterpenoid biosynthesis	4
nta01212	Fatty acid metabolism	3
nta00073	Cutin, suberine and wax biosynthesis	2
nta04146	Peroxisome	2
nta00062	Fatty acid elongation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04146	Peroxisome	5
osa00071	Fatty acid degradation	4
osa01212	Fatty acid metabolism	4
osa03018	RNA degradation	3
osa00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00073	Cutin, suberine and wax biosynthesis	3
zma00910	Nitrogen metabolism	2
zma00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00073	Cutin, suberine and wax biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	5
tae00073	Cutin, suberine and wax biosynthesis	3
tae04146	Peroxisome	3
tae00250	Alanine, aspartate and glutamate metabolism	3
tae00410	beta-Alanine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00073	Cutin, suberine and wax biosynthesis	2
tae04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00073	Cutin, suberine and wax biosynthesis	5
tae02010	ABC transporters	4
tae04981	Folate transport and metabolism	4
tae04146	Peroxisome	3
tae00062	Fatty acid elongation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00073	Cutin, suberine and wax biosynthesis	4
sbi04075	Plant hormone signal transduction	2
sbi00940	Phenylpropanoid biosynthesis	2
sbi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00073	Cutin, suberine and wax biosynthesis	5
sbi00940	Phenylpropanoid biosynthesis	3
sbi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00073	Cutin, suberine and wax biosynthesis	2
bdi04146	Peroxisome	2
bdi00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00073	Cutin, suberine and wax biosynthesis	2
bdi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
bdi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03018	RNA degradation	3

Expression

Expression pattern

Entrez Gene ID^*

100788994

25483583

25492296

7479040

7479041

823580

823579

103863090

103830063

100259719

107889164

107932424

107891237

106356741

106361089

102617900

102627670

102619505

101255436

101249557

101262598

102593077

107770654

107765773

107819278

107278422

103643196

100285021

100501369

123084801

123172362

543003

123412496

8072774

8072775

8063746

100822349

100842081

100827426

66052839

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Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	nta	osa	zma	tae	hvu	sbi	bdi	cre	sot
Paralog	4	1	2	1	3	1	3	1	1	2	2	2	3	2	1	1	3	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100798338 (gma-u.5 coexpression data)

Top 50 enrichment test to 100798338 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**