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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100799613   eukaryotic translation initiation factor 3 subunit D 
 gma-r.7   100799613   eukaryotic translation initiation factor 3 subunit D 
 gma-m.5   100799613   eukaryotic translation initiation factor 3 subunit D 
 gma-u.5   100802805   eukaryotic translation initiation factor 3 subunit D 
 mtr-u.5   25499641   eukaryotic translation initiation factor 3 subunit D 
 ppo-u.5   18097474   eukaryotic translation initiation factor 3 subunit D 
 ppo-u.5   112323318   eukaryotic translation initiation factor 3 subunit D 
 ath-u.5   AT4G20980   Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 
 ath-u.5   AT5G44320   Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 
 vvi-u.5   100260733   eukaryotic translation initiation factor 3 subunit D 
 sly-u.5   101252350   eukaryotic translation initiation factor 3 subunit D 
 osa-u.5   4339634   eukaryotic translation initiation factor 3 subunit D 
 zma-u.5   100383775   uncharacterized LOC100383775 
 zma-u.5   100273610   uncharacterized LOC100273610 

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Top 50 coexpressed genes to 100799613 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100799613 (gma-u.5 coexpression data)

CoexMap"100799613"


gmaLOC100799613 | Entrez gene ID : 100799613      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 1 2 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006413 [list] [network] translational initiation  (87 genes)  IEA  
GO CC
GO:0005852 [list] [network] eukaryotic translation initiation factor 3 complex  (31 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0003743 [list] [network] translation initiation factor activity  (107 genes)  IEA  
Protein XP_003545990.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 1,  cysk 1,  nucl 1,  pero 1,  chlo_mito 1,  cysk_plas 1  (predict for XP_003545990.1)
Subcellular
localization
TargetP
chlo 6,  other 5  (predict for XP_003545990.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100799613

.
gma-r.7
for
100799613

.
gma-m.5
for
100799613

.
gma-u.5
for
100802805

.
mtr-u.5
for
25499641

.
ppo-u.5
for
18097474

.
ppo-u.5
for
112323318

.
ath-u.5
for
AT4G20980

.
ath-u.5
for
AT5G44320

.
vvi-u.5
for
100260733

.
sly-u.5
for
101252350

.
osa-u.5
for
4339634

.
zma-u.5
for
100383775

.
zma-u.5
for
100273610

.


Ortholog ID: 5800
Species ath ath gma gma sly osa zma zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol AT5G44320 AT4G20980 LOC100799613 LOC100802805 LOC101252350 LOC4339634 LOC100383775 LOC100273610 LOC103827911 LOC103839188 LOC100260733 LOC18097474 LOC112323318 LOC25499641 LOC123183156 LOC123146327 LOC123450647 LOC107925264 LOC107934288 LOC111209773 LOC106418273 CHLRE_05g242300v5 LOC8074606 LOC8061823 LOC102588135 LOC102623381 LOC100829584 LOC107806301 LOC107813351
Function* Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D uncharacterized LOC100383775 uncharacterized LOC100273610 eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D-like eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D-like eukaryotic translation initiation factor 3 subunit D uncharacterized protein eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 6
ath03015 mRNA surveillance pathway 2
ath00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 7
sly03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
zma03040 Spliceosome 3
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 4
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 13
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00053 Ascorbate and aldarate metabolism 2
ppo00520 Amino sugar and nucleotide sugar metabolism 2
ppo01240 Biosynthesis of cofactors 2
ppo01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00770 Pantothenate and CoA biosynthesis 3
tae01210 2-Oxocarboxylic acid metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
tae03040 Spliceosome 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00260 Glycine, serine and threonine metabolism 2
ghi00750 Vitamin B6 metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 9
ghi00260 Glycine, serine and threonine metabolism 5
ghi00750 Vitamin B6 metabolism 5
ghi00340 Histidine metabolism 2
ghi00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 4
cre03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
sot00970 Aminoacyl-tRNA biosynthesis 3
sot00270 Cysteine and methionine metabolism 3
sot03040 Spliceosome 2
sot00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 8
bdi03040 Spliceosome 3
bdi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834457 827845 100799613 100802805 101252350 4339634 100383775 100273610 103827911 103839188 100260733 18097474 112323318 25499641 123183156 123146327 123450647 107925264 107934288 111209773 106418273 5724714 8074606 8061823 102588135 102623381 100829584 107806301 107813351
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