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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_05g242300v5   uncharacterized protein 
 ath-u.5   AT4G20980   Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 
 ath-u.5   AT5G44320   Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 
 gma-u.5   100799613   eukaryotic translation initiation factor 3 subunit D 
 gma-u.5   100802805   eukaryotic translation initiation factor 3 subunit D 
 sly-u.5   101252350   eukaryotic translation initiation factor 3 subunit D 
 osa-u.5   4339634   eukaryotic translation initiation factor 3 subunit D 
 zma-u.5   100273610   uncharacterized LOC100273610 
 zma-u.5   100383775   uncharacterized LOC100383775 
 bra-r.6   103827911   eukaryotic translation initiation factor 3 subunit D 
 bra-r.6   103839188   eukaryotic translation initiation factor 3 subunit D 
 vvi-u.5   100260733   eukaryotic translation initiation factor 3 subunit D 
 ppo-u.5   112323318   eukaryotic translation initiation factor 3 subunit D 
 ppo-u.5   18097474   eukaryotic translation initiation factor 3 subunit D 
 mtr-u.5   25499641   eukaryotic translation initiation factor 3 subunit D 
 tae-r.2   123068603   eukaryotic translation initiation factor 3 subunit D 
 tae-r.2   123146327   eukaryotic translation initiation factor 3 subunit D 
 tae-r.2   123183156   eukaryotic translation initiation factor 3 subunit D 
 hvu-r.1   123450647   eukaryotic translation initiation factor 3 subunit D-like 
 ghi-r.1   107934288   eukaryotic translation initiation factor 3 subunit D 
 ghi-r.1   107925264   eukaryotic translation initiation factor 3 subunit D 
 ghi-r.1   107915180   eukaryotic translation initiation factor 3 subunit D 
 bna-r.1   125609876   eukaryotic translation initiation factor 3 subunit D-like 
 bna-r.1   111209773   eukaryotic translation initiation factor 3 subunit D-like 
 bna-r.1   106418273   eukaryotic translation initiation factor 3 subunit D 
 sbi-r.1   8074606   eukaryotic translation initiation factor 3 subunit D 
 sbi-r.1   8061823   eukaryotic translation initiation factor 3 subunit D 
 sot-r.1   102588135   eukaryotic translation initiation factor 3 subunit D 
 cit-r.1   102623381   eukaryotic translation initiation factor 3 subunit D 
 bdi-r.1   100829584   eukaryotic translation initiation factor 3 subunit D 
 nta-r.1   107806301   eukaryotic translation initiation factor 3 subunit D 
 nta-r.1   107813351   eukaryotic translation initiation factor 3 subunit D-like 

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Top 50 coexpressed genes to CHLRE_05g242300v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_05g242300v5 (cre-r.1 coexpression data)

CoexMap"5724714"


creCHLRE_05g242300v5 | Entrez gene ID : 5724714    
Species cre ath gma sly osa zma bra vvi ppo mtr tae hvu ghi bna sbi sot cit bdi nta
Paralog 1 2 2 1 1 2 2 1 2 1 3 1 3 3 2 1 1 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006413 [list] [network] translational initiation  (30 genes)  IEA  
GO CC
GO:0005852 [list] [network] eukaryotic translation initiation factor 3 complex  (13 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (2907 genes)  IEA  
GO MF
GO:0003743 [list] [network] translation initiation factor activity  (37 genes)  IEA  
Protein XP_042924724.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 1,  nucl 1,  plas 1,  pero 1,  cysk 1,  chlo_mito 1,  cysk_nucl 1,  nucl_plas 1,  cysk_plas 1  (predict for XP_042924724.1)
Subcellular
localization
TargetP
other 8,  chlo 3  (predict for XP_042924724.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_05g242300v5
ath-u.5
for
AT4G20980
ath-u.5
for
AT5G44320
gma-u.5
for
100799613
gma-u.5
for
100802805
sly-u.5
for
101252350
osa-u.5
for
4339634
zma-u.5
for
100273610
zma-u.5
for
100383775
bra-r.6
for
103827911
bra-r.6
for
103839188
vvi-u.5
for
100260733
ppo-u.5
for
112323318
ppo-u.5
for
18097474
mtr-u.5
for
25499641
tae-r.2
for
123068603
tae-r.2
for
123146327
tae-r.2
for
123183156
hvu-r.1
for
123450647
ghi-r.1
for
107934288
ghi-r.1
for
107925264
ghi-r.1
for
107915180
bna-r.1
for
125609876
bna-r.1
for
111209773
bna-r.1
for
106418273
sbi-r.1
for
8074606
sbi-r.1
for
8061823
sot-r.1
for
102588135
cit-r.1
for
102623381
bdi-r.1
for
100829584
nta-r.1
for
107806301
nta-r.1
for
107813351


Ortholog ID: 5800
Species cre ath ath gma gma sly osa zma zma bra bra vvi ppo ppo mtr tae tae tae hvu ghi ghi ghi bna bna bna sbi sbi sot cit bdi nta nta
Symbol CHLRE_05g242300v5 AT4G20980 AT5G44320 LOC100799613 LOC100802805 LOC101252350 LOC4339634 LOC100273610 LOC100383775 LOC103827911 LOC103839188 LOC100260733 LOC112323318 LOC18097474 LOC25499641 LOC123068603 LOC123146327 LOC123183156 LOC123450647 LOC107934288 LOC107925264 LOC107901806 LOC125609876 LOC111209773 LOC106418273 LOC8074606 LOC8061823 LOC102588135 LOC102623381 LOC100829584 LOC107806301 LOC107813351
Function* uncharacterized protein Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D uncharacterized LOC100273610 uncharacterized LOC100383775 eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D-like eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D-like eukaryotic translation initiation factor 3 subunit D-like eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D eukaryotic translation initiation factor 3 subunit D-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 4
cre03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 6
ath03015 mRNA surveillance pathway 2
ath00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 7
sly03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
zma03040 Spliceosome 3
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 4
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00053 Ascorbate and aldarate metabolism 2
ppo00520 Amino sugar and nucleotide sugar metabolism 2
ppo01240 Biosynthesis of cofactors 2
ppo01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 13
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00770 Pantothenate and CoA biosynthesis 3
tae01210 2-Oxocarboxylic acid metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
tae03040 Spliceosome 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00770 Pantothenate and CoA biosynthesis 3
tae01210 2-Oxocarboxylic acid metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 9
ghi00260 Glycine, serine and threonine metabolism 5
ghi00750 Vitamin B6 metabolism 5
ghi00340 Histidine metabolism 2
ghi00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00260 Glycine, serine and threonine metabolism 2
ghi00750 Vitamin B6 metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 7
ghi00260 Glycine, serine and threonine metabolism 3
ghi00750 Vitamin B6 metabolism 3
ghi00340 Histidine metabolism 2
ghi00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
sot00970 Aminoacyl-tRNA biosynthesis 3
sot00270 Cysteine and methionine metabolism 3
sot03040 Spliceosome 2
sot00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 8
bdi03040 Spliceosome 3
bdi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 6
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5724714 827845 834457 100799613 100802805 101252350 4339634 100273610 100383775 103827911 103839188 100260733 112323318 18097474 25499641 123068603 123146327 123183156 123450647 107934288 107925264 107901806 125609876 111209773 106418273 8074606 8061823 102588135 102623381 100829584 107806301 107813351
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