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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   PLP1   PAS/LOV protein 1 
 gma-r.7   PLP1   PAS/LOV protein 1 
 gma-m.5   PLP1   PAS/LOV protein 1 
 gma-u.5   PLP2   proteolipid protein 2 (colonic epithelium-enriched) 
 gma-u.5   100776985   protein TWIN LOV 1-like 
 mtr-u.5   11414730   protein TWIN LOV 1 
 ppo-u.5   7494795   protein TWIN LOV 1 
 ppo-u.5   7460504   protein TWIN LOV 1 
 ath-u.5   PLPB   PAS/LOV protein B 
 vvi-u.5   100260420   protein TWIN LOV 1 
 sly-u.5   101255122   protein TWIN LOV 1-like 
 sly-u.5   LLP   LOV/LOV protein 
 osa-u.5   4325659   protein TWIN LOV 1 
 zma-u.5   100216966   uncharacterized LOC100216966 

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Top 50 coexpressed genes to PLP1 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PLP1 (gma-u.5 coexpression data)

CoexMap"100799855"


gmaPLP1 | Entrez gene ID : 100799855      
Species gma mtr ppo ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 5 1 2 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
Protein NP_001240221.1 [sequence] [blastp]
NP_001348083.1 [sequence] [blastp]
NP_001348084.1 [sequence] [blastp]
NP_001348085.1 [sequence] [blastp]
XP_040862161.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 2,  chlo 1,  extr 1,  cysk_nucl 1  (predict for NP_001240221.1)
cyto 4,  nucl 2,  mito 1,  extr 1,  cysk_nucl 1  (predict for NP_001348083.1)
cyto 4,  nucl 2,  chlo 1,  extr 1,  cysk_nucl 1  (predict for NP_001348084.1)
cyto 4,  nucl 2,  chlo 1,  mito 1,  extr 1,  chlo_mito 1  (predict for NP_001348085.1)
cyto 3,  nucl 2,  extr 2,  chlo 1,  mito 1,  chlo_mito 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_040862161.1)
Subcellular
localization
TargetP
other 6  (predict for NP_001240221.1)
other 6  (predict for NP_001348083.1)
other 6  (predict for NP_001348084.1)
other 6  (predict for NP_001348085.1)
other 6  (predict for XP_040862161.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
PLP1

.
gma-r.7
for
PLP1

.
gma-m.5
for
PLP1

.
gma-u.5
for
PLP2

.
gma-u.5
for
100776985

.
mtr-u.5
for
11414730

.
ppo-u.5
for
7494795

.
ppo-u.5
for
7460504

.
ath-u.5
for
PLPB

.
vvi-u.5
for
100260420

.
sly-u.5
for
101255122

.
sly-u.5
for
LLP

.
osa-u.5
for
4325659

.
zma-u.5
for
100216966

.


Ortholog ID: 7138
Species ath gma gma sly sly osa zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot sot cit bdi nta nta
Symbol PLPB LOC100776985 PLP1 LOC101255122 LLP LOC4325659 LOC100216966 LOC103827512 LOC100260420 LOC7494795 LOC7460504 LOC11414730 LOC123068938 LOC123077470 LOC123442924 LOC107894982 LOC121225164 LOC106410498 LOC106369339 LOC8078743 LOC102604395 LOC102598309 LOC102613871 LOC100841617 LOC107803743 LOC107760748
Function* PAS/LOV protein B protein TWIN LOV 1-like PAS/LOV protein 1 protein TWIN LOV 1-like LOV/LOV protein protein TWIN LOV 1 uncharacterized LOC100216966 protein TWIN LOV 1 protein TWIN LOV 1 protein TWIN LOV 1 protein TWIN LOV 1 protein TWIN LOV 1 protein TWIN LOV 1 protein TWIN LOV 1 protein TWIN LOV 1 protein TWIN LOV 1 protein TWIN LOV 1 protein TWIN LOV 1 protein TWIN LOV 1 protein TWIN LOV 1 protein TWIN LOV 1-like protein TWIN LOV 1 protein TWIN LOV 1 protein TWIN LOV 1 protein TWIN LOV 1-like protein TWIN LOV 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00280 Valine, leucine and isoleucine degradation 3
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00280 Valine, leucine and isoleucine degradation 3
vvi00310 Lysine degradation 2
vvi00071 Fatty acid degradation 2
vvi01200 Carbon metabolism 2
vvi01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 2
tae00232 Caffeine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 3
tae00232 Caffeine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
ghi00460 Cyanoamino acid metabolism 2
ghi00630 Glyoxylate and dicarboxylate metabolism 2
ghi00910 Nitrogen metabolism 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
ghi00460 Cyanoamino acid metabolism 2
ghi00630 Glyoxylate and dicarboxylate metabolism 2
ghi00910 Nitrogen metabolism 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 5
bna04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 5
bna04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 3
bdi00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
nta00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
nta00250 Alanine, aspartate and glutamate metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 814800 100776985 100799855 101255122 100529140 4325659 100216966 103827512 100260420 7494795 7460504 11414730 123068938 123077470 123442924 107894982 121225164 106410498 106369339 8078743 102604395 102598309 102613871 100841617 107803743 107760748
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