ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	100801803	cleavage and polyadenylation specificity factor subunit 1
gma-r.7	100801803	cleavage and polyadenylation specificity factor subunit 1
gma-m.5	100801803	cleavage and polyadenylation specificity factor subunit 1
gma-u.5	100785543	cleavage and polyadenylation specificity factor subunit 1
mtr-u.5	25497136	cleavage and polyadenylation specificity factor subunit 1
ppo-u.5	7464309	cleavage and polyadenylation specificity factor subunit 1
ath-u.5	CPSF160	cleavage and polyadenylation specificity factor 160
vvi-u.5	100256706	cleavage and polyadenylation specificity factor subunit 1
sly-u.5	101246111	cleavage and polyadenylation specificity factor subunit 1
osa-u.5	9266269	probable cleavage and polyadenylation specificity factor subunit 1
zma-u.5	103648775	probable cleavage and polyadenylation specificity factor subunit 1

Annotation

functional annotation

KEGG

gmx03015 [list] [network] mRNA surveillance pathway (214 genes)

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(5531 genes)

IEA

GO MF

GO:0003676 [list] [network] nucleic acid binding	(6221 genes)	IEA
GO:0005515 [list] [network] protein binding	(7243 genes)	IEA

Protein

XP_003534039.1 [sequence] [blastp]
XP_006587381.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 3, cyto 2, chlo_mito 2	(predict for XP_003534039.1)
nucl 4, cyto 2, cysk_nucl 2, plas 1, cyto_E.R. 1	(predict for XP_006587381.1)

Subcellular
localization
TargetP

other 5	(predict for XP_003534039.1)
other 8	(predict for XP_006587381.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100801803	gma-r.7 for 100801803	gma-m.5 for 100801803	gma-u.5 for 100785543	mtr-u.5 for 25497136	ppo-u.5 for 7464309	ath-u.5 for CPSF160	vvi-u.5 for 100256706	sly-u.5 for 101246111	osa-u.5 for 9266269	zma-u.5 for 103648775

Ortholog

Ortholog ID: 10380

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

CPSF160

Function^*

cleavage and polyadenylation specificity factor subunit 1

cleavage and polyadenylation specificity factor 160

cleavage and polyadenylation specificity factor subunit 1

probable cleavage and polyadenylation specificity factor subunit 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5
gma03015	mRNA surveillance pathway	2
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	3
gma04120	Ubiquitin mediated proteolysis	3
gma03015	mRNA surveillance pathway	2
gma03020	RNA polymerase	2
gma03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03020	RNA polymerase	5
mtr03013	Nucleocytoplasmic transport	4
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	6
ath03020	RNA polymerase	2
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	6
bra03013	Nucleocytoplasmic transport	4
bra04120	Ubiquitin mediated proteolysis	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03015	mRNA surveillance pathway	3
vvi03440	Homologous recombination	2
vvi03040	Spliceosome	2
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	3
ghi03013	Nucleocytoplasmic transport	3
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	3
ghi03013	Nucleocytoplasmic transport	3
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	7
bna03440	Homologous recombination	2
bna03450	Non-homologous end-joining	2
bna03420	Nucleotide excision repair	2
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	7
bna03440	Homologous recombination	2
bna03450	Non-homologous end-joining	2
bna03420	Nucleotide excision repair	2
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	4
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03013	Nucleocytoplasmic transport	7
sly03040	Spliceosome	3
sly03020	RNA polymerase	2
sly03420	Nucleotide excision repair	2
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	6
sot03015	mRNA surveillance pathway	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	3
nta03015	mRNA surveillance pathway	3
nta03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	4
nta00970	Aminoacyl-tRNA biosynthesis	2
nta03015	mRNA surveillance pathway	2
nta03040	Spliceosome	2
nta03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	4
zma03015	mRNA surveillance pathway	2
zma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	6
tae03013	Nucleocytoplasmic transport	5
tae03030	DNA replication	3
tae03410	Base excision repair	3
tae03420	Nucleotide excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	5
tae03008	Ribosome biogenesis in eukaryotes	4
tae03020	RNA polymerase	3
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	4
hvu03013	Nucleocytoplasmic transport	3
hvu03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03450	Non-homologous end-joining	3
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03015	mRNA surveillance pathway	3
cre00564	Glycerophospholipid metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

100801803

100785543

25497136

7464309

835240

103852133

100256706

107892045

107888746

106380994

106415571

102624179

101246111

102605072

107806979

107767638

9266269

103648775

123043369

123051226

123424542

8069416

100831691

5719187

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100801803 (gma-u.5 coexpression data)

Top 50 enrichment test to 100801803 (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	1	1	1	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100801803 (gma-u.5 coexpression data)

Top 50 enrichment test to 100801803 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**