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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100803349   cyclin-T1-3 
 gma-r.7   100803349   cyclin-T1-3 
 gma-m.5   100803349   cyclin-T1-3 
 gma-u.5   100808446   cyclin-T1-5 
 gma-u.5   100778842   cyclin-T1-5-like 
 gma-u.5   100780279   cyclin-T1-3 
 mtr-u.5   11416403   cyclin-T1-5 
 mtr-u.5   11444662   cyclin-T1-3 
 ppo-u.5   7497532   cyclin-T1-4 
 ppo-u.5   7479725   cyclin-T1-3 
 ppo-u.5   7464855   cyclin-T1-5 
 ath-u.5   CYCT1;2   Cyclin family protein 
 ath-u.5   CYCT1;4   Cyclin family protein 
 ath-u.5   AT5G45190   Cyclin family protein 
 bra-r.6   103857507   cyclin-T1-4 
 bra-r.6   103827811   cyclin-T1-5 
 bra-r.6   103829052   cyclin-T1-3 
 vvi-u.5   100265067   cyclin-T1-5 
 vvi-u.5   100266147   cyclin-T1-3 
 vvi-u.5   100256429   cyclin-T1-3 
 ghi-r.1   121203542   cyclin-T1-4 
 ghi-r.1   121203043   cyclin-T1-5 
 ghi-r.1   107957940   cyclin-T1-3 
 bna-r.1   106377094   cyclin-T1-4 
 bna-r.1   125575006   cyclin-T1-4-like 
 cit-r.1   102615961   cyclin-T1-5 
 cit-r.1   102620815   cyclin-T1-3-like 
 sly-u.5   101260979   cyclin-T1-3 
 sly-u.5   101250904   cyclin-T1-3 
 sot-r.1   102605502   cyclin-T1-4-like 
 sot-r.1   102600355   cyclin-T1-3-like 
 nta-r.1   107785184   cyclin-T1-3-like 
 nta-r.1   107766618   cyclin-T1-3 
 nta-r.1   107764485   cyclin-T1-3-like 
 osa-u.5   4328207   cyclin-T1-1 
 osa-u.5   4349827   cyclin-T1-3-like 
 zma-u.5   103630860   cyclin-T1-3 
 zma-u.5   103654263   protein trichome birefringence-like 28 
 zma-u.5   118472322   cyclin-T1-3-like 
 tae-r.2   123053666   cyclin-T1-3 
 tae-r.2   123086517   cyclin-T1-3 
 tae-r.2   123086514   cyclin-T1-3 
 hvu-r.1   123448034   cyclin-T1-3-like 
 hvu-r.1   123448032   cyclin-T1-3-like 
 hvu-r.1   123427030   cyclin-T1-3-like 
 sbi-r.1   8082147   cyclin-T1-4 
 sbi-r.1   8064072   cyclin-T1-4 
 sbi-r.1   8071073   cyclin-T1-3 
 bdi-r.1   100845488   cyclin-T1-4 
 bdi-r.1   100832981   cyclin-T1-1 
 bdi-r.1   100829376   cyclin-T1-3 
 cre-r.1   CHLRE_14g613900v5   uncharacterized protein 

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Top 50 coexpressed genes to 100803349 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100803349 (gma-u.5 coexpression data)

CoexMap"100803349"


gmaLOC100803349 | Entrez gene ID : 100803349      
Species gma mtr ppo ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 6 2 3 3 3 3 3 2 2 2 2 3 2 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx03250 [list] [network] Viral life cycle - HIV-1 (58 genes)
GO BP
GO:0032786 [list] [network] positive regulation of DNA-templated transcription, elongation  (57 genes)  IEA  
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (844 genes)  IEA  
GO CC
GO:0008024 [list] [network] cyclin/CDK positive transcription elongation factor complex  (9 genes)  IEA  
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO MF
GO:0061575 [list] [network] cyclin-dependent protein serine/threonine kinase activator activity  (12 genes)  IEA  
Protein XP_003529443.1 [sequence] [blastp]
XP_006583940.1 [sequence] [blastp]
XP_006583941.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for XP_003529443.1)
nucl 9  (predict for XP_006583940.1)
nucl 8,  cyto 2  (predict for XP_006583941.1)
Subcellular
localization
TargetP
other 9  (predict for XP_003529443.1)
other 9  (predict for XP_006583940.1)
other 9  (predict for XP_006583941.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100803349
gma-r.7
for
100803349
gma-m.5
for
100803349
gma-u.5
for
100808446
gma-u.5
for
100778842
gma-u.5
for
100780279
mtr-u.5
for
11416403
mtr-u.5
for
11444662
ppo-u.5
for
7497532
ppo-u.5
for
7479725
ppo-u.5
for
7464855
ath-u.5
for
CYCT1;2
ath-u.5
for
CYCT1;4
ath-u.5
for
AT5G45190
bra-r.6
for
103857507
bra-r.6
for
103827811
bra-r.6
for
103829052
vvi-u.5
for
100265067
vvi-u.5
for
100266147
vvi-u.5
for
100256429
ghi-r.1
for
121203542
ghi-r.1
for
121203043
ghi-r.1
for
107957940
bna-r.1
for
106377094
bna-r.1
for
125575006
cit-r.1
for
102615961
cit-r.1
for
102620815
sly-u.5
for
101260979
sly-u.5
for
101250904
sot-r.1
for
102605502
sot-r.1
for
102600355
nta-r.1
for
107785184
nta-r.1
for
107766618
nta-r.1
for
107764485
osa-u.5
for
4328207
osa-u.5
for
4349827
zma-u.5
for
103630860
zma-u.5
for
103654263
zma-u.5
for
118472322
tae-r.2
for
123053666
tae-r.2
for
123086517
tae-r.2
for
123086514
hvu-r.1
for
123448034
hvu-r.1
for
123448032
hvu-r.1
for
123427030
sbi-r.1
for
8082147
sbi-r.1
for
8064072
sbi-r.1
for
8071073
bdi-r.1
for
100845488
bdi-r.1
for
100832981
bdi-r.1
for
100829376
cre-r.1
for
CHLRE_14g613900v5


Ortholog ID: 936
Species gma gma gma mtr mtr ppo ppo ppo ath ath ath bra bra vvi vvi vvi ghi ghi ghi bna bna cit cit sly sly sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol LOC100803349 LOC100778842 LOC100802312 LOC11416403 LOC11444662 LOC7497532 LOC7492107 LOC7456334 CYCT1;2 CYCT1;4 CYCT1;3 LOC103853610 LOC103834124 LOC100265067 LOC100266147 LOC100256429 LOC121203542 LOC121203043 LOC107891752 LOC106358030 LOC106425346 LOC102615961 LOC102620815 LOC101260979 LOC101250904 LOC102605502 LOC102600355 LOC107785184 LOC107766618 LOC107764485 LOC4328207 LOC4349827 LOC103630860 LOC103654263 LOC103626584 LOC123091478 LOC123091481 LOC123110943 LOC123448032 LOC123427030 LOC123399216 LOC8064072 LOC8071073 LOC8070784 LOC100845488 LOC100832981 LOC100829376 CHLRE_14g613900v5
Function* cyclin-T1-3 cyclin-T1-5-like cyclin-T1-3 cyclin-T1-5 cyclin-T1-3 cyclin-T1-4 cyclin-T1-3 cyclin-T1-3 Cyclin family protein Cyclin family protein cyclin T 1;3 cyclin-T1-5 cyclin-T1-4 cyclin-T1-5 cyclin-T1-3 cyclin-T1-3 cyclin-T1-4 cyclin-T1-5 cyclin-T1-5 cyclin-T1-3 cyclin-T1-3 cyclin-T1-5 cyclin-T1-3-like cyclin-T1-3 cyclin-T1-3 cyclin-T1-4-like cyclin-T1-3-like cyclin-T1-3-like cyclin-T1-3 cyclin-T1-3-like cyclin-T1-1 cyclin-T1-3-like cyclin-T1-3 protein trichome birefringence-like 28 cyclin-T1-1 cyclin-T1-3 cyclin-T1-3 cyclin-T1-4 cyclin-T1-3-like cyclin-T1-3-like cyclin-T1-4-like cyclin-T1-4 cyclin-T1-3 cyclin-T1-3 cyclin-T1-4 cyclin-T1-1 cyclin-T1-3 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03250 Viral life cycle - HIV-1 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 4
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 4
ppo03015 mRNA surveillance pathway 3
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
ghi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 3
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
nta03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03250 Viral life cycle - HIV-1 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 3
zma00561 Glycerolipid metabolism 2
zma00564 Glycerophospholipid metabolism 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03250 Viral life cycle - HIV-1 4
tae03008 Ribosome biogenesis in eukaryotes 3
tae03083 Polycomb repressive complex 3
tae04712 Circadian rhythm - plant 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03250 Viral life cycle - HIV-1 4
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 5
hvu00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 11
cre03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100803349 100778842 100802312 11416403 11444662 7497532 7492107 7456334 827698 827702 839655 103853610 103834124 100265067 100266147 100256429 121203542 121203043 107891752 106358030 106425346 102615961 102620815 101260979 101250904 102605502 102600355 107785184 107766618 107764485 4328207 4349827 103630860 103654263 103626584 123091478 123091481 123110943 123448032 123427030 123399216 8064072 8071073 8070784 100845488 100832981 100829376 5724594
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