ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100810748	casein kinase II subunit alpha-2
gma-r.7	100810748	casein kinase II subunit alpha-2
gma-u.5	100820471	casein kinase II subunit alpha-1-like
gma-u.5	100819679	casein kinase II subunit alpha-2
gma-u.5	100817795	casein kinase II subunit alpha-4, chloroplastic
mtr-u.5	11410839	casein kinase II subunit alpha-2
mtr-u.5	11434455	casein kinase II subunit alpha-2
mtr-u.5	25493524	casein kinase II subunit alpha
ppo-u.5	7489763	casein kinase II subunit alpha-2
ppo-u.5	18101120	casein kinase II subunit alpha-2
ppo-u.5	7489764	casein kinase II subunit alpha
ath-u.5	CKA1	casein kinase alpha 1
ath-u.5	CKA2	casein kinase II, alpha chain 2
ath-u.5	CKA3	Protein kinase superfamily protein
bra-r.6	103864454	casein kinase II subunit alpha-4, chloroplastic
bra-r.6	103827764	casein kinase II subunit alpha-2
bra-r.6	103840918	casein kinase II subunit alpha-2
vvi-u.5	100266111	casein kinase II subunit alpha-2
vvi-u.5	100262741	casein kinase II subunit alpha
vvi-u.5	100259500	casein kinase II subunit alpha-2
ghi-r.1	107913276	casein kinase II subunit alpha
ghi-r.1	107914335	casein kinase II subunit alpha-2
ghi-r.1	121222419	casein kinase II subunit alpha-2
bna-r.1	106448060	casein kinase II subunit alpha-2
bna-r.1	106431200	casein kinase II subunit alpha-1-like
bna-r.1	125591609	casein kinase II subunit alpha-2-like
cit-r.1	102619470	casein kinase II subunit alpha-2-like
cit-r.1	102608753	casein kinase II subunit alpha-2-like
cit-r.1	102611814	casein kinase II subunit alpha-2
sly-u.5	101256338	casein kinase II subunit alpha-1
sly-u.5	101244750	casein kinase II subunit alpha-2
sly-u.5	101246108	casein kinase II subunit alpha
sot-r.1	102594048	casein kinase II subunit alpha-2
sot-r.1	102586679	casein kinase II subunit alpha-2-like
sot-r.1	102590078	casein kinase II subunit alpha-like
nta-r.1	107789145	casein kinase II subunit alpha-1
nta-r.1	107789408	casein kinase II subunit alpha-1-like
nta-r.1	107812932	casein kinase II subunit alpha-2
osa-u.5	4342248	casein kinase II subunit alpha-2-like
osa-u.5	4334206	casein kinase II subunit alpha-2-like
osa-u.5	4332003	casein kinase II subunit alpha-2-like
zma-u.5	541825	protein kinase CK2 catalytic subunit CK2 alpha-3
zma-u.5	100193188	uncharacterized LOC100193188
zma-u.5	542460	CK2 protein kinase alpha 2
tae-r.2	123085018	casein kinase II subunit alpha-2
tae-r.2	123098329	casein kinase II subunit alpha-2
tae-r.2	123045091	casein kinase II subunit alpha-2
hvu-r.1	123452366	casein kinase II subunit alpha-2-like
hvu-r.1	123452358	casein kinase II subunit alpha-2-like
hvu-r.1	123449374	casein kinase II subunit alpha-2-like
sbi-r.1	8083977	casein kinase II subunit alpha
sbi-r.1	8081615	casein kinase II subunit alpha
sbi-r.1	8085835	casein kinase II subunit alpha-2
bdi-r.1	100822483	casein kinase II subunit alpha
bdi-r.1	100826277	casein kinase II subunit alpha-2
bdi-r.1	100846754	casein kinase II subunit alpha-2
cre-r.1	CHLRE_12g549800v5	uncharacterized protein
cre-r.1	CHLRE_16g665600v5	uncharacterized protein
cre-r.1	CHLRE_14g619166v5	uncharacterized protein

Top 50 coexpressed genes to 100810748 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100810748 (gma-u.5 coexpression data)

CoexMap"100810748"

[Cytoscape]

Annotation

functional annotation

KEGG

gmx03008 [list] [network] Ribosome biogenesis in eukaryotes (605 genes)

gmx04712 [list] [network] Circadian rhythm - plant (105 genes)

GO BP

GO:0018107 [list] [network] peptidyl-threonine phosphorylation	(21 genes)	IEA
GO:0018105 [list] [network] peptidyl-serine phosphorylation	(168 genes)	IEA
GO:0051726 [list] [network] regulation of cell cycle	(201 genes)	IEA

GO CC

GO:0005956 [list] [network] protein kinase CK2 complex	(12 genes)	IEA
GO:0005829 [list] [network] cytosol	(1702 genes)	IEA
GO:0005634 [list] [network] nucleus	(5531 genes)	IEA

GO MF

GO:0004674 [list] [network] protein serine/threonine kinase activity	(848 genes)	IEA
GO:0005524 [list] [network] ATP binding	(3753 genes)	IEA

Protein

XP_003539294.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 4, mito 1

(predict for XP_003539294.1)

Subcellular
localization
TargetP

other 8, mito 4

(predict for XP_003539294.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100810748	gma-r.7 for 100810748	gma-u.5 for 100820471	gma-u.5 for 100819679	gma-u.5 for 100817795	mtr-u.5 for 11410839	mtr-u.5 for 11434455	mtr-u.5 for 25493524	ppo-u.5 for 7489763	ppo-u.5 for 18101120	ppo-u.5 for 7489764	ath-u.5 for CKA1	ath-u.5 for CKA2	ath-u.5 for CKA3	bra-r.6 for 103864454	bra-r.6 for 103827764	bra-r.6 for 103840918	vvi-u.5 for 100266111	vvi-u.5 for 100262741	vvi-u.5 for 100259500	ghi-r.1 for 107913276	ghi-r.1 for 107914335	ghi-r.1 for 121222419	bna-r.1 for 106448060	bna-r.1 for 106431200	bna-r.1 for 125591609	cit-r.1 for 102619470	cit-r.1 for 102608753	cit-r.1 for 102611814	sly-u.5 for 101256338	sly-u.5 for 101244750	sly-u.5 for 101246108	sot-r.1 for 102594048	sot-r.1 for 102586679	sot-r.1 for 102590078	nta-r.1 for 107789145	nta-r.1 for 107789408	nta-r.1 for 107812932	osa-u.5 for 4342248	osa-u.5 for 4334206	osa-u.5 for 4332003	zma-u.5 for 541825	zma-u.5 for 100193188	zma-u.5 for 542460	tae-r.2 for 123085018	tae-r.2 for 123098329	tae-r.2 for 123045091	hvu-r.1 for 123452366	hvu-r.1 for 123452358	hvu-r.1 for 123449374	sbi-r.1 for 8083977	sbi-r.1 for 8081615	sbi-r.1 for 8085835	bdi-r.1 for 100822483	bdi-r.1 for 100826277	bdi-r.1 for 100846754	cre-r.1 for CHLRE_12g549800v5	cre-r.1 for CHLRE_16g665600v5	cre-r.1 for CHLRE_14g619166v5

Ortholog

Ortholog ID: 1035

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

CKA1

CKA2

Function^*

casein kinase II subunit alpha-4, chloroplastic

casein kinase II subunit alpha