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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_16g665600v5   uncharacterized protein 
 ath-u.5   CKA1   casein kinase alpha 1 
 ath-u.5   AT2G23070   Protein kinase superfamily protein 
 ath-u.5   CKA3   Protein kinase superfamily protein 
 gma-u.5   100776388   casein kinase II subunit alpha 
 gma-u.5   100810748   casein kinase II subunit alpha-2 
 gma-u.5   100813528   casein kinase II subunit alpha-2 
 sly-u.5   101244750   casein kinase II subunit alpha-2 
 sly-u.5   101246108   casein kinase II subunit alpha 
 sly-u.5   101256338   casein kinase II subunit alpha-1 
 osa-u.5   4342248   casein kinase II subunit alpha-2-like 
 osa-u.5   4332003   casein kinase II subunit alpha-2-like 
 osa-u.5   4334206   casein kinase II subunit alpha-2-like 
 zma-u.5   103625865   casein kinase II subunit alpha-2 
 zma-u.5   541825   protein kinase CK2 catalytic subunit CK2 alpha-3 
 zma-u.5   100193188   uncharacterized LOC100193188 
 vvi-u.5   100259500   casein kinase II subunit alpha-2 
 vvi-u.5   100266111   casein kinase II subunit alpha-2 
 vvi-u.5   100262741   casein kinase II subunit alpha 
 ppo-u.5   7489764   casein kinase II subunit alpha 
 ppo-u.5   7489763   casein kinase II subunit alpha-2 
 ppo-u.5   18101120   casein kinase II subunit alpha-2 
 mtr-u.5   11434455   casein kinase II subunit alpha-2 
 mtr-u.5   11410839   casein kinase II subunit alpha-2 
 mtr-u.5   25493524   casein kinase II subunit alpha 

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Top 50 coexpressed genes to CHLRE_16g665600v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_16g665600v5 (cre-r.1 coexpression data)

CoexMap"5726985"


creCHLRE_16g665600v5 | Entrez gene ID : 5726985      
Species cre ath gma sly osa zma vvi ppo mtr ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03008 [list] [network] Ribosome biogenesis in eukaryotes (47 genes)
cre04712 [list] [network] Circadian rhythm - plant (5 genes)
GO BP
GO:0006468 [list] [network] protein phosphorylation  (662 genes)  IEA  
GO CC
GO:0005956 [list] [network] protein kinase CK2 complex  (4 genes)  IEA  
GO:0005829 [list] [network] cytosol  (481 genes)  IEA  
GO:0005634 [list] [network] nucleus  (1576 genes)  IEA  
GO MF
GO:0004674 [list] [network] protein serine/threonine kinase activity  (211 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (1223 genes)  IEA  
Protein XP_001701441.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for XP_001701441.1)
Subcellular
localization
TargetP
other 7  (predict for XP_001701441.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_16g665600v5

.
ath-u.5
for
CKA1

.
ath-u.5
for
AT2G23070

.
ath-u.5
for
CKA3

.
gma-u.5
for
100776388

.
gma-u.5
for
100810748

.
gma-u.5
for
100813528

.
sly-u.5
for
101244750

.
sly-u.5
for
101246108

.
sly-u.5
for
101256338

.
osa-u.5
for
4342248

.
osa-u.5
for
4332003

.
osa-u.5
for
4334206

.
zma-u.5
for
103625865

.
zma-u.5
for
541825

.
zma-u.5
for
100193188

.
vvi-u.5
for
100259500

.
vvi-u.5
for
100266111

.
vvi-u.5
for
100262741

.
ppo-u.5
for
7489764

.
ppo-u.5
for
7489763

.
ppo-u.5
for
18101120

.
mtr-u.5
for
11434455

.
mtr-u.5
for
11410839

.
mtr-u.5
for
25493524

.


Ortholog ID: 1035
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol CKA1 CKA2 LOC100817795 LOC100776388 LOC101244750 LOC101256338 LOC4334206 LOC4332003 LOC541825 LOC103625865 LOC103827764 LOC103864454 LOC100262741 LOC100266111 LOC18101120 LOC18101134 LOC25493524 LOC11410839 LOC123093046 LOC542789 LOC123449374 LOC123426341 LOC107941899 LOC121222419 LOC106371342 LOC125591609 CHLRE_16g665600v5 CHLRE_12g549800v5 LOC8083977 LOC8085835 LOC102594048 LOC102586679 LOC102619470 LOC102611814 LOC100839551 LOC100846754 LOC107812932 LOC107789145
Function* casein kinase alpha 1 casein kinase II, alpha chain 2 casein kinase II subunit alpha-4, chloroplastic casein kinase II subunit alpha casein kinase II subunit alpha-2 casein kinase II subunit alpha-1 casein kinase II subunit alpha-2-like casein kinase II subunit alpha-2-like protein kinase CK2 catalytic subunit CK2 alpha-3 casein kinase II subunit alpha-2 casein kinase II subunit alpha-2 casein kinase II subunit alpha-4, chloroplastic casein kinase II subunit alpha casein kinase II subunit alpha-2 casein kinase II subunit alpha-2 casein kinase II subunit alpha-2 casein kinase II subunit alpha casein kinase II subunit alpha-2 casein kinase II subunit alpha-2 casein kinase II subunit alpha-2 casein kinase II subunit alpha-2-like casein kinase II subunit alpha-2 casein kinase II subunit alpha-2 casein kinase II subunit alpha-2 casein kinase II subunit alpha-4, chloroplastic casein kinase II subunit alpha-2-like uncharacterized protein uncharacterized protein casein kinase II subunit alpha casein kinase II subunit alpha-2 casein kinase II subunit alpha-2 casein kinase II subunit alpha-2-like casein kinase II subunit alpha-2-like casein kinase II subunit alpha-2 casein kinase II subunit alpha-2 casein kinase II subunit alpha-2 casein kinase II subunit alpha-2 casein kinase II subunit alpha-1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
ath04712 Circadian rhythm - plant 3
ath03015 mRNA surveillance pathway 3
ath04130 SNARE interactions in vesicular transport 2
ath03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 3
ath04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00071 Fatty acid degradation 4
gma00592 alpha-Linolenic acid metabolism 4
gma01212 Fatty acid metabolism 4
gma01040 Biosynthesis of unsaturated fatty acids 3
gma01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa04141 Protein processing in endoplasmic reticulum 2
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
zma04712 Circadian rhythm - plant 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 7
zma04075 Plant hormone signal transduction 3
zma03008 Ribosome biogenesis in eukaryotes 2
zma04712 Circadian rhythm - plant 2
zma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra04712 Circadian rhythm - plant 2
bra00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
bra04712 Circadian rhythm - plant 2
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 4
vvi00020 Citrate cycle (TCA cycle) 3
vvi00785 Lipoic acid metabolism 3
vvi01200 Carbon metabolism 3
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
ppo04136 Autophagy - other 3
ppo04382 Cornified envelope formation 3
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 3
mtr04144 Endocytosis 3
mtr01200 Carbon metabolism 3
mtr00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00740 Riboflavin metabolism 3
tae01240 Biosynthesis of cofactors 3
tae03008 Ribosome biogenesis in eukaryotes 3
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae04712 Circadian rhythm - plant 6
tae03050 Proteasome 5
tae03015 mRNA surveillance pathway 4
tae04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 4
hvu04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
ghi04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
ghi04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna04712 Circadian rhythm - plant 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 8
sot03008 Ribosome biogenesis in eukaryotes 2
sot04712 Circadian rhythm - plant 2
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot04712 Circadian rhythm - plant 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
cit04712 Circadian rhythm - plant 2
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 2
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 6
nta03008 Ribosome biogenesis in eukaryotes 5
nta03040 Spliceosome 2
nta04075 Plant hormone signal transduction 2
nta04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 6
nta03008 Ribosome biogenesis in eukaryotes 5
nta00010 Glycolysis / Gluconeogenesis 2
nta00051 Fructose and mannose metabolism 2
nta00052 Galactose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836873 824162 100817795 100776388 101244750 101256338 4334206 4332003 541825 103625865 103827764 103864454 100262741 100266111 18101120 18101134 25493524 11410839 123093046 542789 123449374 123426341 107941899 121222419 106371342 125591609 5726985 5719648 8083977 8085835 102594048 102586679 102619470 102611814 100839551 100846754 107812932 107789145
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