ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100811300	serrate RNA effector molecule
gma-r.7	100811300	serrate RNA effector molecule
gma-m.5	100811300	serrate RNA effector molecule
gma-u.5	100817569	serrate RNA effector molecule
gma-u.5	100788714	serrate RNA effector molecule
mtr-u.5	11405241	serrate RNA effector molecule
mtr-u.5	25488483	serrate RNA effector molecule
ppo-u.5	18098063	serrate RNA effector molecule
ppo-u.5	7460090	serrate RNA effector molecule
ath-u.5	SE	C2H2 zinc-finger protein SERRATE (SE)
bra-r.6	103829649	serrate RNA effector molecule
bra-r.6	103864752	serrate RNA effector molecule
vvi-u.5	100254817	serrate RNA effector molecule
vvi-u.5	100266053	serrate RNA effector molecule
ghi-r.1	107963306	serrate RNA effector molecule
ghi-r.1	107931114	serrate RNA effector molecule
ghi-r.1	107932496	serrate RNA effector molecule
bna-r.1	106446771	serrate RNA effector molecule-like
bna-r.1	106358446	serrate RNA effector molecule
bna-r.1	106445446	serrate RNA effector molecule
cit-r.1	102626268	serrate RNA effector molecule
sly-u.5	101252107	serrate RNA effector molecule
sot-r.1	102598346	serrate RNA effector molecule
nta-r.1	107774571	serrate RNA effector molecule
nta-r.1	107790573	serrate RNA effector molecule
osa-u.5	9270793	serrate RNA effector molecule
osa-u.5	4346039	serrate RNA effector molecule
zma-u.5	100382107	Putative SERRATE-related C2H2 zinc-finger family protein
zma-u.5	100279372	putative SERRATE-related C2H2 zinc-finger family protein
tae-r.2	123171254	serrate RNA effector molecule
tae-r.2	123097655	translation initiation factor IF-2
hvu-r.1	123407046	serrate RNA effector molecule-like
hvu-r.1	123409327	serrate RNA effector molecule-like
sbi-r.1	8062421	serrate RNA effector molecule
sbi-r.1	8065556	serrate RNA effector molecule
bdi-r.1	100839798	serrate RNA effector molecule
bdi-r.1	100834422	serrate RNA effector molecule
cre-r.1	CHLRE_13g575900v5	uncharacterized protein

Top 50 coexpressed genes to 100811300 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100811300 (gma-u.5 coexpression data)

CoexMap"100811300"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0031053 [list] [network] primary miRNA processing	(3 genes)	IEA
GO:0006397 [list] [network] mRNA processing	(368 genes)	IEA

GO CC

GO:0016604 [list] [network] nuclear body

(40 genes)

IEA

GO MF

Protein

XP_003523929.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto_nucl 5

(predict for XP_003523929.1)

Subcellular
localization
TargetP

chlo 6, other 6

(predict for XP_003523929.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100811300	gma-r.7 for 100811300	gma-m.5 for 100811300	gma-u.5 for 100817569	gma-u.5 for 100788714	mtr-u.5 for 11405241	mtr-u.5 for 25488483	ppo-u.5 for 18098063	ppo-u.5 for 7460090	ath-u.5 for SE	bra-r.6 for 103829649	bra-r.6 for 103864752	vvi-u.5 for 100254817	vvi-u.5 for 100266053	ghi-r.1 for 107963306	ghi-r.1 for 107931114	ghi-r.1 for 107932496	bna-r.1 for 106446771	bna-r.1 for 106358446	bna-r.1 for 106445446	cit-r.1 for 102626268	sly-u.5 for 101252107	sot-r.1 for 102598346	nta-r.1 for 107774571	nta-r.1 for 107790573	osa-u.5 for 9270793	osa-u.5 for 4346039	zma-u.5 for 100382107	zma-u.5 for 100279372	tae-r.2 for 123171254	tae-r.2 for 123097655	hvu-r.1 for 123407046	hvu-r.1 for 123409327	sbi-r.1 for 8062421	sbi-r.1 for 8065556	bdi-r.1 for 100839798	bdi-r.1 for 100834422	cre-r.1 for CHLRE_13g575900v5

Ortholog

Ortholog ID: 2792

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

serrate RNA effector molecule

C2H2 zinc-finger protein SERRATE (SE)

serrate RNA effector molecule

serrate RNA effector molecule-like

serrate RNA effector molecule

Putative SERRATE-related C2H2 zinc-finger family protein

putative SERRATE-related C2H2 zinc-finger family protein

serrate RNA effector molecule

translation initiation factor IF-2

serrate RNA effector molecule

serrate RNA effector molecule-like

serrate RNA effector molecule

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4
gma03250	Viral life cycle - HIV-1	3
gma03008	Ribosome biogenesis in eukaryotes	2
gma04712	Circadian rhythm - plant	2
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	3
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	5
mtr03015	mRNA surveillance pathway	3
mtr03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	3
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	8
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2
bna03015	mRNA surveillance pathway	2
bna04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	8
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4
sly03250	Viral life cycle - HIV-1	3
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	2
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	7
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	6
tae03013	Nucleocytoplasmic transport	3
tae03015	mRNA surveillance pathway	3
tae03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04141	Protein processing in endoplasmic reticulum	3
sbi04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	3

Expression

Expression pattern

Entrez Gene ID^*

100811300

100817569

100788714

11405241

25488483

18098063

7460090

817252

103829649

103864752

100254817

100266053

107932496

107936065

107959056

106446771

106358446

106445446

102626268

101252107

102598346

107774571

107790573

9270793

4346039

100382107

100279372

732796

123097655

123162886

123407046

123409327

8062421

8065556

100839798

100834422

5719231

The preparation time of this page was 0.1 [sec].


Species	gma	mtr	ppo	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	2	2	1	2	2	3	3	1	1	1	2	2	2	2	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100811300 (gma-u.5 coexpression data)

Top 50 enrichment test to 100811300 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**