ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	GH3	auxin-responsive protein GH3
gma-r.7	GH3	auxin-responsive protein GH3
gma-u.5	100776488	probable indole-3-acetic acid-amido synthetase GH3.1
gma-u.5	100779307	indole-3-acetic acid-amido synthetase GH3.3
gma-u.5	100803737	probable indole-3-acetic acid-amido synthetase GH3.1
mtr-u.5	25479861	probable indole-3-acetic acid-amido synthetase GH3.1
mtr-u.5	11405444	probable indole-3-acetic acid-amido synthetase GH3.1
ppo-u.5	18101160	probable indole-3-acetic acid-amido synthetase GH3.1
ppo-u.5	7469610	probable indole-3-acetic acid-amido synthetase GH3.1
ppo-u.5	7465052	probable indole-3-acetic acid-amido synthetase GH3.1
ath-u.5	GH3.1	Auxin-responsive GH3 family protein
ath-u.5	GH3.3	Auxin-responsive GH3 family protein
ath-u.5	BRU6	Auxin-responsive GH3 family protein
bra-r.6	103848751	indole-3-acetic acid-amido synthetase GH3.2
bra-r.6	103842426	indole-3-acetic acid-amido synthetase GH3.3
bra-r.6	103847985	probable indole-3-acetic acid-amido synthetase GH3.1
vvi-u.5	100250741	probable indole-3-acetic acid-amido synthetase GH3.1
vvi-u.5	100250868	probable indole-3-acetic acid-amido synthetase GH3.1
ghi-r.1	107938368	probable indole-3-acetic acid-amido synthetase GH3.1
ghi-r.1	107894308	probable indole-3-acetic acid-amido synthetase GH3.1
ghi-r.1	107900296	probable indole-3-acetic acid-amido synthetase GH3.1
bna-r.1	111214866	indole-3-acetic acid-amido synthetase GH3.2
bna-r.1	106432954	probable indole-3-acetic acid-amido synthetase GH3.1
bna-r.1	106353688	indole-3-acetic acid-amido synthetase GH3.2
cit-r.1	102619738	probable indole-3-acetic acid-amido synthetase GH3.1
cit-r.1	102620300	probable indole-3-acetic acid-amido synthetase GH3.1
cit-r.1	102622009	probable indole-3-acetic acid-amido synthetase GH3.1
sly-u.5	GH3-4	putative indole-3-acetic acid amido synthetase
sly-u.5	GH3-3	protein GRETCHEN HAGEN 3-3
sly-u.5	GH3.2	indole-3-acetic acid-amido synthetase GH3.2
sot-r.1	102604728	probable indole-3-acetic acid-amido synthetase GH3.1
sot-r.1	107058985	indole-3-acetic acid-amido synthetase GH3.3-like
sot-r.1	102600299	probable indole-3-acetic acid-amido synthetase GH3.1
nta-r.1	107803574	putative indole-3-acetic acid-amido synthetase GH3.1
nta-r.1	107818015	probable indole-3-acetic acid-amido synthetase GH3.1
nta-r.1	107794279	putative indole-3-acetic acid-amido synthetase GH3.1
osa-u.5	4326893	probable indole-3-acetic acid-amido synthetase GH3.2
zma-u.5	100280445	indole-3-acetic acid amido synthetase
zma-u.5	107275219	uncharacterized LOC107275219
zma-u.5	100383126	putative indole-3-acetic acid-amido synthetase GH3.1
tae-r.2	123188079	indole-3-acetic acid-amido synthetase GH3.8
tae-r.2	123044352	indole-3-acetic acid-amido synthetase GH3.8
hvu-r.1	123444492	probable indole-3-acetic acid-amido synthetase GH3.2
hvu-r.1	123425474	indole-3-acetic acid-amido synthetase GH3.8
sbi-r.1	8072113	probable indole-3-acetic acid-amido synthetase GH3.2
sbi-r.1	8063226	probable indole-3-acetic acid-amido synthetase GH3.8
sbi-r.1	8059110	probable indole-3-acetic acid-amido synthetase GH3.8
bdi-r.1	100826517	probable indole-3-acetic acid-amido synthetase GH3.8
bdi-r.1	100833271	probable indole-3-acetic acid-amido synthetase GH3.2

Top 50 coexpressed genes to GH3 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to GH3 (gma-u.5 coexpression data)

CoexMap"100811309"

[Cytoscape]

Annotation

functional annotation

KEGG

gmx04075 [list] [network] Plant hormone signal transduction (888 genes)

GO BP

GO CC

GO:0005737 [list] [network] cytoplasm

(9233 genes)

IEA

GO MF

GO:0016881 [list] [network] acid-amino acid ligase activity

(50 genes)

IEA

Protein

NP_001345148.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto 4

(predict for NP_001345148.1)

Subcellular
localization
TargetP

other 8

(predict for NP_001345148.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for GH3	gma-r.7 for GH3	gma-u.5 for 100776488	gma-u.5 for 100779307	gma-u.5 for 100803737	mtr-u.5 for 25479861	mtr-u.5 for 11405444	ppo-u.5 for 18101160	ppo-u.5 for 7469610	ppo-u.5 for 7465052	ath-u.5 for GH3.1	ath-u.5 for GH3.3	ath-u.5 for BRU6	bra-r.6 for 103848751	bra-r.6 for 103842426	bra-r.6 for 103847985	vvi-u.5 for 100250741	vvi-u.5 for 100250868	ghi-r.1 for 107938368	ghi-r.1 for 107894308	ghi-r.1 for 107900296	bna-r.1 for 111214866	bna-r.1 for 106432954	bna-r.1 for 106353688	cit-r.1 for 102619738	cit-r.1 for 102620300	cit-r.1 for 102622009	sly-u.5 for GH3-4	sly-u.5 for GH3-3	sly-u.5 for GH3.2	sot-r.1 for 102604728	sot-r.1 for 107058985	sot-r.1 for 102600299	nta-r.1 for 107803574	nta-r.1 for 107818015	nta-r.1 for 107794279	osa-u.5 for 4326893	zma-u.5 for 100280445	zma-u.5 for 107275219	zma-u.5 for 100383126	tae-r.2 for 123188079	tae-r.2 for 123044352	hvu-r.1 for 123444492	hvu-r.1 for 123425474	sbi-r.1 for 8072113	sbi-r.1 for 8063226	sbi-r.1 for 8059110	bdi-r.1 for 100826517	bdi-r.1 for 100833271

Ortholog

Ortholog ID: 1785

Species

gma

mtr

ppo

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

GH3

GH3.1

BRU6

GH3-4

GH3-3

GH3.2

Function^*

auxin-responsive protein GH3