ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
gma-u.5	100816654	uncharacterized LOC100816654
gma-r.7	100816654	uncharacterized LOC100816654
gma-u.5	100808999	uncharacterized LOC100808999
gma-u.5	100804381	uncharacterized LOC100804381
gma-u.5	100802562	increased DNA methylation 1
mtr-u.5	11427165	uncharacterized LOC11427165
mtr-u.5	25483909	uncharacterized LOC25483909
ppo-u.5	7487249	uncharacterized LOC7487249
ppo-u.5	18098261	uncharacterized LOC18098261
ppo-u.5	18100113	uncharacterized LOC18100113
ath-u.5	AT2G27980	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein
ath-u.5	AT2G36720	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein
ath-u.5	AT2G37520	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein
vvi-u.5	100260233	uncharacterized LOC100260233
vvi-u.5	100255152	uncharacterized LOC100255152
vvi-u.5	100246491	uncharacterized LOC100246491
sly-u.5	101264398	uncharacterized LOC101264398
sly-u.5	101259496	uncharacterized LOC101259496
sly-u.5	101246881	uncharacterized LOC101246881
osa-u.5	4339828	uncharacterized LOC4339828
osa-u.5	4342152	uncharacterized LOC4342152
zma-u.5	103626499	uncharacterized LOC103626499
zma-u.5	100381857	uncharacterized LOC100381857
zma-u.5	100274990	uncharacterized LOC100274990

Top 50 coexpressed genes to 100816654 (gma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100816654 (gma-u.5 coexpression data)

CoexMap"100816654"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II

(294 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(5531 genes)

IEA

GO MF

GO:0042393 [list] [network] histone binding	(111 genes)	IEA
GO:0003682 [list] [network] chromatin binding	(270 genes)	IEA
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding	(500 genes)	IEA

Protein

XP_040864055.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, chlo 2, cyto 1, plas 1, cysk 1, cyto_pero 1, cysk_plas 1, cyto_E.R. 1

(predict for XP_040864055.1)

Subcellular
localization
TargetP

other 8, chlo 5

(predict for XP_040864055.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100816654 .	gma-r.7 for 100816654 .	gma-u.5 for 100808999 .	gma-u.5 for 100804381 .	gma-u.5 for 100802562 .	mtr-u.5 for 11427165 .	mtr-u.5 for 25483909 .	ppo-u.5 for 7487249 .	ppo-u.5 for 18098261 .	ppo-u.5 for 18100113 .	ath-u.5 for AT2G27980 .	ath-u.5 for AT2G36720 .	ath-u.5 for AT2G37520 .	vvi-u.5 for 100260233 .	vvi-u.5 for 100255152 .	vvi-u.5 for 100246491 .	sly-u.5 for 101264398 .	sly-u.5 for 101259496 .	sly-u.5 for 101246881 .	osa-u.5 for 4339828 .	osa-u.5 for 4342152 .	zma-u.5 for 103626499 .	zma-u.5 for 100381857 .	zma-u.5 for 100274990 .

Ortholog

Ortholog ID: 1229

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

Function^*

Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein

increased DNA methylation 1

uncharacterized LOC100816654

uncharacterized LOC101264398

uncharacterized LOC101246881

uncharacterized LOC4339828

uncharacterized LOC4342152

uncharacterized LOC103626499

uncharacterized LOC100274990

uncharacterized LOC103865605

uncharacterized LOC103829696

uncharacterized LOC100260233

uncharacterized LOC100255152

uncharacterized LOC7487249

uncharacterized LOC18098261

uncharacterized LOC25484120

uncharacterized LOC11427165

uncharacterized LOC123088663

uncharacterized LOC123156835

uncharacterized LOC123409426

uncharacterized LOC123413187

uncharacterized LOC107912979

increased DNA methylation 1

uncharacterized LOC106447368

uncharacterized LOC106446730

uncharacterized protein

uncharacterized LOC8066856

uncharacterized LOC8066402

uncharacterized LOC102580511

uncharacterized LOC102597257

uncharacterized LOC102626366

uncharacterized LOC102609015

uncharacterized LOC100835479

uncharacterized LOC100842921

uncharacterized LOC107813909

uncharacterized LOC107778093

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	2
ath03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03082	ATP-dependent chromatin remodeling	2
gma03013	Nucleocytoplasmic transport	2
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	5
bra03015	mRNA surveillance pathway	3
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03250	Viral life cycle - HIV-1	2
mtr03040	Spliceosome	2
mtr04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00562	Inositol phosphate metabolism	2
hvu04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00562	Inositol phosphate metabolism	2
ghi04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	2
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04136	Autophagy - other	3
cit04120	Ubiquitin mediated proteolysis	2
cit03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04712	Circadian rhythm - plant	4
cit00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2
bdi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

818244

818328

100802562

100816654

101264398

101246881

4339828

4342152

103626499

100274990

103865605

103829696

100260233

100255152

7487249

18098261

25484120

11427165

123088663

123156835

123409426

123413187

107912979

107889706

106447368

106446730

5715156

8066856

8066402

102580511

102597257

102626366

102609015

100835479

100842921

107813909

107778093

The preparation time of this page was 0.5 [sec].


Species	gma	mtr	ppo	ath	vvi	sly	osa	zma	cre	ghi	cit	hvu	bdi	sot	bra	sbi	tae	nta	bna
Paralog	5	2	3	3	3	3	2	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100816654 (gma-u.5 coexpression data)

Top 50 enrichment test to 100816654 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**