ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sly-u.5	101259496	uncharacterized LOC101259496
sly-r.6	101259496	uncharacterized LOC101259496
sly-u.5	101264398	uncharacterized LOC101264398
sly-u.5	101246881	uncharacterized LOC101246881
sly-u.5	101254125	uncharacterized LOC101254125
sot-r.1	102585738	uncharacterized LOC102585738
sot-r.1	102580511	uncharacterized LOC102580511
sot-r.1	102590922	uncharacterized LOC102590922
nta-r.1	107831397	uncharacterized LOC107831397
nta-r.1	107813909	uncharacterized LOC107813909
nta-r.1	107813096	uncharacterized LOC107813096
ath-u.5	AT2G27980	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein
ath-u.5	AT2G36720	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein
ath-u.5	AT2G37520	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein
gma-u.5	100816654	uncharacterized LOC100816654
gma-u.5	100808999	uncharacterized LOC100808999
gma-u.5	100804381	uncharacterized LOC100804381
bra-r.6	103864815	uncharacterized LOC103864815
bra-r.6	103865556	uncharacterized LOC103865556
bra-r.6	103829696	uncharacterized LOC103829696
vvi-u.5	100260233	uncharacterized LOC100260233
vvi-u.5	100255152	uncharacterized LOC100255152
vvi-u.5	100246491	uncharacterized LOC100246491
ppo-u.5	7487249	uncharacterized LOC7487249
ppo-u.5	7496384	uncharacterized LOC7496384
ppo-u.5	18098261	uncharacterized LOC18098261
mtr-u.5	11427165	uncharacterized LOC11427165
ghi-r.1	107891593	uncharacterized LOC107891593
ghi-r.1	107891032	increased DNA methylation 1
ghi-r.1	107905246	uncharacterized LOC107905246
bna-r.1	125585657	uncharacterized LOC125585657
bna-r.1	106352584	uncharacterized LOC106352584
bna-r.1	106391485	uncharacterized LOC106391485
cit-r.1	102624448	uncharacterized LOC102624448
cit-r.1	102609015	uncharacterized LOC102609015
cit-r.1	102626366	uncharacterized LOC102626366
osa-u.5	4339828	uncharacterized LOC4339828
osa-u.5	4342152	uncharacterized LOC4342152
zma-u.5	100381857	uncharacterized LOC100381857
zma-u.5	100274990	uncharacterized LOC100274990
zma-u.5	103626499	uncharacterized LOC103626499
tae-r.2	123165603	uncharacterized LOC123165603
tae-r.2	123149556	uncharacterized LOC123149556
tae-r.2	123156835	uncharacterized LOC123156835
hvu-r.1	123409426	uncharacterized LOC123409426
hvu-r.1	123413187	uncharacterized LOC123413187
sbi-r.1	8066856	uncharacterized LOC8066856
sbi-r.1	8066402	uncharacterized LOC8066402
bdi-r.1	100842921	uncharacterized LOC100842921
bdi-r.1	100835479	uncharacterized LOC100835479
cre-r.1	CHLRE_01g018200v5	uncharacterized protein

Top 50 coexpressed genes to 101259496 (sly-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 101259496 (sly-u.5 coexpression data)

CoexMap"101259496"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II

(133 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(2947 genes)

IEA

GO MF

GO:0042393 [list] [network] histone binding	(63 genes)	IEA
GO:0003682 [list] [network] chromatin binding	(150 genes)	IEA
GO:0000977 [list] [network] RNA polymerase II transcription regulatory region sequence-specific DNA binding	(306 genes)	IEA

Protein

XP_010312281.2 [sequence] [blastp]
XP_010312282.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, E.R. 3, E.R._plas 3, plas 1, cysk_nucl 1	(predict for XP_010312281.2)
nucl 4, E.R. 3, E.R._plas 3, plas 1, cysk_nucl 1	(predict for XP_010312282.2)

Subcellular
localization
TargetP

other 8	(predict for XP_010312281.2)
other 8	(predict for XP_010312282.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sly-u.5 for 101259496	sly-r.6 for 101259496	sly-u.5 for 101264398	sly-u.5 for 101246881	sly-u.5 for 101254125	sot-r.1 for 102585738	sot-r.1 for 102580511	sot-r.1 for 102590922	nta-r.1 for 107831397	nta-r.1 for 107813909	nta-r.1 for 107813096	ath-u.5 for AT2G27980	ath-u.5 for AT2G36720	ath-u.5 for AT2G37520	gma-u.5 for 100816654	gma-u.5 for 100808999	gma-u.5 for 100804381	bra-r.6 for 103864815	bra-r.6 for 103865556	bra-r.6 for 103829696	vvi-u.5 for 100260233	vvi-u.5 for 100255152	vvi-u.5 for 100246491	ppo-u.5 for 7487249	ppo-u.5 for 7496384	ppo-u.5 for 18098261	mtr-u.5 for 11427165	ghi-r.1 for 107891593	ghi-r.1 for 107891032	ghi-r.1 for 107905246	bna-r.1 for 125585657	bna-r.1 for 106352584	bna-r.1 for 106391485	cit-r.1 for 102624448	cit-r.1 for 102609015	cit-r.1 for 102626366	osa-u.5 for 4339828	osa-u.5 for 4342152	zma-u.5 for 100381857	zma-u.5 for 100274990	zma-u.5 for 103626499	tae-r.2 for 123165603	tae-r.2 for 123149556	tae-r.2 for 123156835	hvu-r.1 for 123409426	hvu-r.1 for 123413187	sbi-r.1 for 8066856	sbi-r.1 for 8066402	bdi-r.1 for 100842921	bdi-r.1 for 100835479	cre-r.1 for CHLRE_01g018200v5

Ortholog

Ortholog ID: 1229

Species

sly

sot

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC101259496

uncharacterized LOC101264398

uncharacterized LOC101246881

uncharacterized LOC102585738

uncharacterized LOC102580511

uncharacterized LOC102597257

uncharacterized LOC107813909

uncharacterized LOC107797055

uncharacterized LOC107778093

Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein

uncharacterized LOC100816654

uncharacterized LOC100804381

increased DNA methylation 1

uncharacterized LOC103865556

uncharacterized LOC103829696

uncharacterized LOC103865605

uncharacterized LOC100260233

uncharacterized LOC100255152

uncharacterized LOC100246491

uncharacterized LOC7487249

uncharacterized LOC18098261

uncharacterized LOC18100113

uncharacterized LOC11427165

uncharacterized LOC25484120

uncharacterized LOC25487462

increased DNA methylation 1

uncharacterized LOC107912979

uncharacterized LOC106396860

uncharacterized LOC106446730

uncharacterized LOC106447368

uncharacterized LOC102624448

uncharacterized LOC102609015

uncharacterized LOC102626366

uncharacterized LOC4339828

uncharacterized LOC4342152

uncharacterized LOC100381857

uncharacterized LOC100274990

uncharacterized LOC103626499

uncharacterized LOC123156835

uncharacterized LOC123088663

uncharacterized LOC123149955

uncharacterized LOC123409426

uncharacterized LOC123413187

uncharacterized LOC8066856

uncharacterized LOC8066402

uncharacterized LOC100842921

uncharacterized LOC100835479

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	2
ath03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	2
ath03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03082	ATP-dependent chromatin remodeling	2
gma03013	Nucleocytoplasmic transport	2
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	5
bra03015	mRNA surveillance pathway	3
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03250	Viral life cycle - HIV-1	2
mtr03040	Spliceosome	2
mtr04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	2
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00562	Inositol phosphate metabolism	2
ghi04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04712	Circadian rhythm - plant	4
cit00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04136	Autophagy - other	3
cit04120	Ubiquitin mediated proteolysis	2
cit03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	5
zma04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	2
tae03013	Nucleocytoplasmic transport	2
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00562	Inositol phosphate metabolism	2
hvu04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04136	Autophagy - other	2
sbi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2
bdi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

101259496

101264398

101246881

102585738

102580511

102597257

107813909

107797055

107778093

817342

818244

818328

100816654

100804381

100802562

103865556

103829696

103865605

100260233

100255152

100246491

7487249

18098261

18100113

11427165

25484120

25487462

107889706

107905330

107912979

106396860

106446730

106447368

102624448

102609015

102626366

4339828

4342152

100381857

100274990

103626499

123156835

123088663

123149955

123409426

123413187

8066856

8066402

100842921

100835479

5715156

The preparation time of this page was 0.1 [sec].


Species	sly	sot	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	3	3	3	3	3	3	3	1	3	3	3	2	3	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 101259496 (sly-u.5 coexpression data)

Top 50 enrichment test to 101259496 (sly-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**