ATTED-II : GeneCoexpression result

Species	Gene	Description
gma-u.5	100817982	uncharacterized LOC100817982
gma-r.7	100817982	uncharacterized LOC100817982
gma-m.5	100817982	uncharacterized LOC100817982
gma-u.5	100787575	uncharacterized LOC100787575
gma-u.5	100802173	uncharacterized LOC100802173
gma-u.5	100804615	uncharacterized LOC100804615
mtr-u.5	11405592	DNA-directed RNA polymerase III subunit RPC4
mtr-u.5	25491881	uncharacterized LOC25491881
ppo-u.5	7465496	DNA-directed RNA polymerase III subunit rpc4
ppo-u.5	18099314	uncharacterized LOC18099314
ppo-u.5	18100354	uncharacterized LOC18100354
ath-u.5	AT4G25180	RNA polymerase III RPC4
ath-u.5	AT5G09380	RNA polymerase III RPC4
vvi-u.5	100260717	uncharacterized LOC100260717
vvi-u.5	100256088	uncharacterized LOC100256088
sly-u.5	101254492	uncharacterized LOC101254492
sly-u.5	101251183	uncharacterized LOC101251183
osa-u.5	4324905	uncharacterized LOC4324905
osa-u.5	4335691	uncharacterized LOC4335691
zma-u.5	100283887	uncharacterized LOC100283887
zma-u.5	100193764	uncharacterized LOC100193764

Annotation

functional annotation

KEGG

gmx03020 [list] [network] RNA polymerase (81 genes)

GO BP

GO:0042797 [list] [network] tRNA transcription by RNA polymerase III

(12 genes)

IEA

GO CC

GO:0005666 [list] [network] RNA polymerase III complex

(45 genes)

IEA

GO MF

GO:0003677 [list] [network] DNA binding

(3517 genes)

IEA

Protein

XP_003534408.1 [sequence] [blastp]
XP_006587708.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for XP_003534408.1)
nucl 10	(predict for XP_006587708.1)

Subcellular
localization
TargetP

other 8	(predict for XP_003534408.1)
other 8	(predict for XP_006587708.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	gma-u.5 for 100817982 .	gma-r.7 for 100817982 .	gma-m.5 for 100817982 .	gma-u.5 for 100787575 .	gma-u.5 for 100802173 .	gma-u.5 for 100804615 .	mtr-u.5 for 11405592 .	mtr-u.5 for 25491881 .	ppo-u.5 for 7465496 .	ppo-u.5 for 18099314 .	ppo-u.5 for 18100354 .	ath-u.5 for AT4G25180 .	ath-u.5 for AT5G09380 .	vvi-u.5 for 100260717 .	vvi-u.5 for 100256088 .	sly-u.5 for 101254492 .	sly-u.5 for 101251183 .	osa-u.5 for 4324905 .	osa-u.5 for 4335691 .	zma-u.5 for 100283887 .	zma-u.5 for 100193764 .

Ortholog

Ortholog ID: 2289

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

Function^*

RNA polymerase III RPC4

uncharacterized LOC100804615

uncharacterized LOC100817982

uncharacterized LOC101254492

uncharacterized LOC101251183

uncharacterized LOC4324905

uncharacterized LOC4335691

uncharacterized LOC100193764

uncharacterized LOC103847203

uncharacterized LOC103862974

uncharacterized LOC100256088

uncharacterized LOC100260717

DNA-directed RNA polymerase III subunit rpc4

uncharacterized LOC18099314

DNA-directed RNA polymerase III subunit RPC4

uncharacterized LOC25491881

uncharacterized LOC123096081

DNA-directed RNA polymerase III subunit RPC4

uncharacterized LOC123442032

DNA-directed RNA polymerase III subunit rpc4-like

uncharacterized LOC107894804

uncharacterized LOC107907108

uncharacterized BNAA01G14530D

uncharacterized LOC106346571

uncharacterized protein

DNA-directed RNA polymerase III subunit RPC4

uncharacterized LOC102600766

DNA-directed RNA polymerase III subunit RPC4-like

uncharacterized LOC102622464

uncharacterized LOC102615087

uncharacterized LOC100846711

uncharacterized LOC100824963

uncharacterized LOC107773198

uncharacterized LOC142166352

Coexmap

Please wait a moment.

Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03020	RNA polymerase	2
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00230	Purine metabolism	2
gma00920	Sulfur metabolism	2
gma01320	Sulfur cycle	2
gma03020	RNA polymerase	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	3
sly03060	Protein export	3
sly03040	Spliceosome	2
sly00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	4
bra03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	3
ppo03020	RNA polymerase	2
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	4
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	5
tae00340	Histidine metabolism	2
tae00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	4
ghi00040	Pentose and glucuronate interconversions	4
ghi00053	Ascorbate and aldarate metabolism	4
ghi00561	Glycerolipid metabolism	4
ghi00620	Pyruvate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	4
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	5
sot04382	Cornified envelope formation	4
sot00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	3
cit03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4
nta03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	3

Expression

Expression pattern

Entrez Gene ID^*

830797

828621

100804615

100817982

101254492

101251183

4324905

4335691

100193764

103847203

103862974

100256088

100260717

7465496

18099314

11405592

25491881

123096081

123180569

123442032

123447740

107894804

107907108

106439689

106346571

5727928

8078658

8070837

102600766

102597569

102622464

102615087

100846711

100824963

107773198

142166352

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100817982 (gma-u.5 coexpression data)

Top 50 enrichment test to 100817982 (gma-u.5 coexpression data)


Species	gma	mtr	ppo	ath	vvi	sly	osa	zma	sbi	nta	bra	cre	hvu	cit	bdi	sot	tae	bna	ghi
Paralog	6	2	3	2	2	2	2	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100817982 (gma-u.5 coexpression data)

Top 50 enrichment test to 100817982 (gma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**