ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	106419349	uncharacterized LOC106419349
bna-r.1	BNAC09G47140D	uncharacterized BNAC09G47140D
bna-r.1	BNAA01G14530D	uncharacterized BNAA01G14530D
bna-r.1	106346571	uncharacterized LOC106346571
bra-r.6	103847203	uncharacterized LOC103847203
bra-r.6	103862974	uncharacterized LOC103862974
ath-u.5	AT4G25180	RNA polymerase III RPC4
ath-u.5	AT5G09380	RNA polymerase III RPC4
ghi-r.1	107953633	DNA-directed RNA polymerase III subunit rpc4
ghi-r.1	107932035	uncharacterized LOC107932035
cit-r.1	102622464	uncharacterized LOC102622464
cit-r.1	102615087	uncharacterized LOC102615087
gma-u.5	100817982	uncharacterized LOC100817982
gma-u.5	100804615	uncharacterized LOC100804615
gma-u.5	100802173	uncharacterized LOC100802173
vvi-u.5	100260717	uncharacterized LOC100260717
vvi-u.5	100256088	uncharacterized LOC100256088
ppo-u.5	18099314	uncharacterized LOC18099314
ppo-u.5	18100354	uncharacterized LOC18100354
ppo-u.5	7465496	DNA-directed RNA polymerase III subunit rpc4
mtr-u.5	11405592	DNA-directed RNA polymerase III subunit RPC4
mtr-u.5	25491881	uncharacterized LOC25491881
sly-u.5	101254492	uncharacterized LOC101254492
sly-u.5	101251183	uncharacterized LOC101251183
sot-r.1	102600766	uncharacterized LOC102600766
sot-r.1	102597569	DNA-directed RNA polymerase III subunit RPC4-like
nta-r.1	107827370	uncharacterized LOC107827370
nta-r.1	107824845	uncharacterized LOC107824845
nta-r.1	107809460	uncharacterized LOC107809460
osa-u.5	4324905	uncharacterized LOC4324905
osa-u.5	4335691	uncharacterized LOC4335691
zma-u.5	100283887	uncharacterized LOC100283887
zma-u.5	100193764	uncharacterized LOC100193764
tae-r.2	123062906	nucleolin
tae-r.2	123071772	DNA-directed RNA polymerase III subunit RPC4
tae-r.2	123080096	nucleolin
hvu-r.1	123447740	DNA-directed RNA polymerase III subunit rpc4-like
hvu-r.1	123442032	uncharacterized LOC123442032
hvu-r.1	123425982	uncharacterized LOC123425982
sbi-r.1	8070837	DNA-directed RNA polymerase III subunit RPC4
sbi-r.1	8078658	DNA-directed RNA polymerase III subunit RPC4
bdi-r.1	100846711	uncharacterized LOC100846711
bdi-r.1	100824963	uncharacterized LOC100824963
cre-r.1	CHLRE_12g497400v5	uncharacterized protein

Top 50 coexpressed genes to 106419349 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 106419349 (bna-r.1 coexpression data)

CoexMap"106419349"

[Cytoscape]

Annotation

functional annotation

KEGG

bna03020 [list] [network] RNA polymerase (161 genes)

GO BP

GO:0006383 [list] [network] transcription by RNA polymerase III

(76 genes)

IEA

GO CC

GO:0005666 [list] [network] RNA polymerase III complex

(74 genes)

IEA

GO MF

GO:0003677 [list] [network] DNA binding

(6522 genes)

IEA

Protein

XP_013715571.2 [sequence] [blastp]
XP_022549484.2 [sequence] [blastp]
XP_048598418.1 [sequence] [blastp]
XP_048598419.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, nucl 2, cyto 1, pero 1, cyto_pero 1	(predict for XP_013715571.2)
chlo 8, plas 1	(predict for XP_022549484.2)
chlo 6, nucl 2, cyto 1, pero 1, cyto_pero 1	(predict for XP_048598418.1)
chlo 8, plas 1	(predict for XP_048598419.1)

Subcellular
localization
TargetP

other 6, chlo 3	(predict for XP_013715571.2)
mito 3	(predict for XP_022549484.2)
other 6, chlo 3	(predict for XP_048598418.1)
mito 3	(predict for XP_048598419.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 106419349	bna-r.1 for BNAC09G47140D	bna-r.1 for BNAA01G14530D	bna-r.1 for 106346571	bra-r.6 for 103847203	bra-r.6 for 103862974	ath-u.5 for AT4G25180	ath-u.5 for AT5G09380	ghi-r.1 for 107953633	ghi-r.1 for 107932035	cit-r.1 for 102622464	cit-r.1 for 102615087	gma-u.5 for 100817982	gma-u.5 for 100804615	gma-u.5 for 100802173	vvi-u.5 for 100260717	vvi-u.5 for 100256088	ppo-u.5 for 18099314	ppo-u.5 for 18100354	ppo-u.5 for 7465496	mtr-u.5 for 11405592	mtr-u.5 for 25491881	sly-u.5 for 101254492	sly-u.5 for 101251183	sot-r.1 for 102600766	sot-r.1 for 102597569	nta-r.1 for 107827370	nta-r.1 for 107824845	nta-r.1 for 107809460	osa-u.5 for 4324905	osa-u.5 for 4335691	zma-u.5 for 100283887	zma-u.5 for 100193764	tae-r.2 for 123062906	tae-r.2 for 123071772	tae-r.2 for 123080096	hvu-r.1 for 123447740	hvu-r.1 for 123442032	hvu-r.1 for 123425982	sbi-r.1 for 8070837	sbi-r.1 for 8078658	bdi-r.1 for 100846711	bdi-r.1 for 100824963	cre-r.1 for CHLRE_12g497400v5

Ortholog

Ortholog ID: 2289

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC106419349

uncharacterized BNAA01G14530D

uncharacterized LOC106346571

uncharacterized LOC103847203

uncharacterized LOC103862974

RNA polymerase III RPC4

uncharacterized LOC107932035

uncharacterized LOC107907108

uncharacterized LOC107894804

uncharacterized LOC102622464

uncharacterized LOC102615087

uncharacterized LOC100817982

uncharacterized LOC100804615

uncharacterized LOC100787575

uncharacterized LOC100260717

uncharacterized LOC100256088

uncharacterized LOC18099314

uncharacterized LOC18100354

DNA-directed RNA polymerase III subunit rpc4

DNA-directed RNA polymerase III subunit RPC4

uncharacterized LOC25491881

uncharacterized LOC101254492

uncharacterized LOC101251183

uncharacterized LOC102600766

DNA-directed RNA polymerase III subunit RPC4-like

uncharacterized LOC107827370

uncharacterized LOC107773198

uncharacterized LOC142166352

uncharacterized LOC4324905

uncharacterized LOC4335691

uncharacterized LOC100283887

uncharacterized LOC100193764

DNA-directed RNA polymerase III subunit RPC4

uncharacterized LOC123096081

DNA-directed RNA polymerase III subunit rpc4-like

uncharacterized LOC123442032

uncharacterized LOC123425982

DNA-directed RNA polymerase III subunit RPC4

uncharacterized LOC100846711

uncharacterized LOC100824963

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03060	Protein export	6
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	4
bra03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03020	RNA polymerase	2
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	4
ghi00040	Pentose and glucuronate interconversions	4
ghi00053	Ascorbate and aldarate metabolism	4
ghi00561	Glycerolipid metabolism	4
ghi00620	Pyruvate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	3
cit03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00230	Purine metabolism	2
gma00920	Sulfur metabolism	2
gma01320	Sulfur cycle	2
gma03020	RNA polymerase	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04130	SNARE interactions in vesicular transport	3
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	3
ppo03020	RNA polymerase	2
ppo03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	5
ppo03008	Ribosome biogenesis in eukaryotes	4
ppo03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	4
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	3
sly03060	Protein export	3
sly03040	Spliceosome	2
sly00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	4
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	5
sot04382	Cornified envelope formation	4
sot00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4
nta03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	5
zma04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	5
tae00340	Histidine metabolism	2
tae00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	11
hvu03008	Ribosome biogenesis in eukaryotes	3
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	5

Expression

Expression pattern

Entrez Gene ID^*

106419349

106439689

106346571

103847203

103862974

828621

830797

107932035

107907108

107894804

102622464

102615087

100817982

100804615

100787575

100260717

100256088

18099314

18100354

7465496

11405592

25491881

101254492

101251183

102600766

102597569

107827370

107773198

142166352

4324905

4335691

100283887

100193764

123071772

123180569

123096081

123447740

123442032

123425982

8070837

8078658

100846711

100824963

5727928

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Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	2	2	2	3	2	3	2	2	2	3	2	2	3	3	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 106419349 (bna-r.1 coexpression data)

Top 50 enrichment test to 106419349 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**