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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100819996   pentatricopeptide repeat-containing protein At1g18900 
 gma-r.7   100819996   pentatricopeptide repeat-containing protein At1g18900 
 gma-u.5   100785113   pentatricopeptide repeat-containing protein At1g74750 
 gma-u.5   100781029   pentatricopeptide repeat-containing protein At1g18900 
 mtr-u.5   25488891   pentatricopeptide repeat-containing protein At1g74750 
 ppo-u.5   7474846   pentatricopeptide repeat-containing protein At1g18900 
 ath-u.5   AT1G18900   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-u.5   AT1G74750   Pentatricopeptide repeat (PPR) superfamily protein 
 vvi-u.5   100251827   pentatricopeptide repeat-containing protein At1g74750 
 sly-u.5   101268561   pentatricopeptide repeat-containing protein At1g74750-like 
 osa-u.5   4352912   pentatricopeptide repeat-containing protein At1g74750 
 zma-u.5   100272697   uncharacterized LOC100272697 

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Top 50 coexpressed genes to 100819996 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100819996 (gma-u.5 coexpression data)

CoexMap"100819996"


gmaLOC100819996 | Entrez gene ID : 100819996      
Species gma mtr ppo ath vvi sly osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 4 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (7243 genes)  IEA  
Protein XP_003523047.2 [sequence] [blastp]
XP_006578589.1 [sequence] [blastp]
XP_014630250.1 [sequence] [blastp]
XP_040870840.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 7,  chlo 2  (predict for XP_003523047.2)
chlo 9  (predict for XP_006578589.1)
mito 6,  chlo 4  (predict for XP_014630250.1)
mito 6,  chlo 3  (predict for XP_040870840.1)
Subcellular
localization
TargetP
mito 3  (predict for XP_003523047.2)
chlo 8  (predict for XP_006578589.1)
mito 4  (predict for XP_014630250.1)
mito 3  (predict for XP_040870840.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100819996
gma-r.7
for
100819996
gma-u.5
for
100785113
gma-u.5
for
100781029
mtr-u.5
for
25488891
ppo-u.5
for
7474846
ath-u.5
for
AT1G18900
ath-u.5
for
AT1G74750
vvi-u.5
for
100251827
sly-u.5
for
101268561
osa-u.5
for
4352912
zma-u.5
for
100272697


Ortholog ID: 6401
Species gma gma mtr ppo ath ath bra bra vvi ghi ghi bna bna cit sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC100819996 LOC100785113 LOC25488891 LOC7474846 AT1G74750 AT1G18900 LOC103831936 LOC103830686 LOC100251827 LOC121209612 LOC107912154 LOC125610255 LOC106357277 LOC102612162 LOC101268561 LOC102591791 LOC107803229 LOC107796619 LOC4352912 LOC100272697 LOC123172668 LOC123119038 LOC123452090 LOC8072878 LOC100832383
Function* pentatricopeptide repeat-containing protein At1g18900 pentatricopeptide repeat-containing protein At1g74750 pentatricopeptide repeat-containing protein At1g74750 pentatricopeptide repeat-containing protein At1g18900 Pentatricopeptide repeat (PPR) superfamily protein Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At1g74750 pentatricopeptide repeat-containing protein At1g74750 pentatricopeptide repeat-containing protein At1g74750 pentatricopeptide repeat-containing protein At1g74750-like pentatricopeptide repeat-containing protein At1g74750 pentatricopeptide repeat-containing protein At1g18900-like pentatricopeptide repeat-containing protein At1g74750 pentatricopeptide repeat-containing protein At1g74750 pentatricopeptide repeat-containing protein At1g74750-like pentatricopeptide repeat-containing protein At1g74750-like pentatricopeptide repeat-containing protein At1g74750 pentatricopeptide repeat-containing protein At1g74750-like pentatricopeptide repeat-containing protein At1g74750 uncharacterized LOC100272697 pentatricopeptide repeat-containing protein At1g18900 pentatricopeptide repeat-containing protein At1g18900 pentatricopeptide repeat-containing protein At1g18900-like pentatricopeptide repeat-containing protein At1g18900 pentatricopeptide repeat-containing protein At1g18900
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00730 Thiamine metabolism 2
gma01240 Biosynthesis of cofactors 2
gma04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00561 Glycerolipid metabolism 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 3
ghi04075 Plant hormone signal transduction 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00061 Fatty acid biosynthesis 4
ghi01212 Fatty acid metabolism 4
ghi00190 Oxidative phosphorylation 3
ghi04075 Plant hormone signal transduction 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00100 Steroid biosynthesis 2
nta00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00100 Steroid biosynthesis 2
nta00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 4
zma03008 Ribosome biogenesis in eukaryotes 2
zma04712 Circadian rhythm - plant 2
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00330 Arginine and proline metabolism 3
tae03060 Protein export 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100819996 100785113 25488891 7474846 843814 838471 103831936 103830686 100251827 121209612 107912154 125610255 106357277 102612162 101268561 102591791 107803229 107796619 4352912 100272697 123172668 123119038 123452090 8072878 100832383
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