ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100821950	uncharacterized LOC100821950
tae-r.2	123168125	uncharacterized LOC123168125
tae-r.2	123159208	uncharacterized LOC123159208
tae-r.2	123151848	uncharacterized LOC123151848
hvu-r.1	123409658	uncharacterized LOC123409658
osa-u.5	9269842	uncharacterized LOC9269842
osa-u.5	4346146	uncharacterized LOC4346146
osa-u.5	4346583	uncharacterized LOC4346583
zma-u.5	100282041	cation cation antiporter
zma-u.5	100285634	cation cation antiporter
sbi-r.1	8060602	uncharacterized LOC8060602
ath-u.5	AT3G55600	Membrane fusion protein Use1
ath-u.5	AT1G54110	Membrane fusion protein Use1
gma-u.5	100812755	uncharacterized LOC100812755
gma-u.5	100811568	uncharacterized LOC100811568
gma-u.5	100793814	putative membrane fusion protein Use1
sly-u.5	101252142	uncharacterized LOC101252142
sly-u.5	101246592	uncharacterized LOC101246592
bra-r.6	103841471	uncharacterized LOC103841471
vvi-u.5	100246170	uncharacterized LOC100246170
vvi-u.5	100260177	uncharacterized LOC100260177
ppo-u.5	7490468	uncharacterized LOC7490468
mtr-u.5	25500698	uncharacterized LOC25500698
mtr-u.5	11418616	uncharacterized LOC11418616
ghi-r.1	107914922	uncharacterized LOC107914922
ghi-r.1	107915406	uncharacterized LOC107915406
bna-r.1	BNAA09G35220D	uncharacterized BNAA09G35220D
bna-r.1	BNAC08G26520D	uncharacterized BNAC08G26520D
sot-r.1	102587298	uncharacterized LOC102587298
sot-r.1	102583810	uncharacterized LOC102583810
cit-r.1	102608784	uncharacterized LOC102608784
nta-r.1	107793376	uncharacterized LOC107793376
nta-r.1	107786363	uncharacterized LOC107786363
nta-r.1	107770677	uncharacterized LOC107770677

Top 50 coexpressed genes to 100821950 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100821950 (bdi-r.1 coexpression data)

CoexMap"100821950"

[Cytoscape]

Annotation

functional annotation

KEGG

bdi04130 [list] [network] SNARE interactions in vesicular transport (45 genes)

GO BP

GO:0006890 [list] [network] retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum

(32 genes)

IEA

GO CC

GO:0031201 [list] [network] SNARE complex	(42 genes)	IEA
GO:0005783 [list] [network] endoplasmic reticulum	(470 genes)	IEA

GO MF

GO:0005484 [list] [network] SNAP receptor activity

(40 genes)

IEA

Protein

XP_003574836.1 [sequence] [blastp]
XP_010235341.1 [sequence] [blastp]

Subcellular
localization
wolf

golg 4, vacu 2, nucl 1, plas 1, nucl_plas 1	(predict for XP_003574836.1)
golg 4, vacu 2, nucl 1, plas 1, nucl_plas 1	(predict for XP_010235341.1)

Subcellular
localization
TargetP

mito 6	(predict for XP_003574836.1)
mito 6	(predict for XP_010235341.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100821950	tae-r.2 for 123168125	tae-r.2 for 123159208	tae-r.2 for 123151848	hvu-r.1 for 123409658	osa-u.5 for 9269842	osa-u.5 for 4346146	osa-u.5 for 4346583	zma-u.5 for 100282041	zma-u.5 for 100285634	sbi-r.1 for 8060602	ath-u.5 for AT3G55600	ath-u.5 for AT1G54110	gma-u.5 for 100812755	gma-u.5 for 100811568	gma-u.5 for 100793814	sly-u.5 for 101252142	sly-u.5 for 101246592	bra-r.6 for 103841471	vvi-u.5 for 100246170	vvi-u.5 for 100260177	ppo-u.5 for 7490468	mtr-u.5 for 25500698	mtr-u.5 for 11418616	ghi-r.1 for 107914922	ghi-r.1 for 107915406	bna-r.1 for BNAA09G35220D	bna-r.1 for BNAC08G26520D	sot-r.1 for 102587298	sot-r.1 for 102583810	cit-r.1 for 102608784	nta-r.1 for 107793376	nta-r.1 for 107786363	nta-r.1 for 107770677

Ortholog

Ortholog ID: 4753

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

uncharacterized LOC100821950

uncharacterized LOC123168125

uncharacterized LOC123143309

uncharacterized LOC123409658

uncharacterized LOC9269842

uncharacterized LOC4346146

uncharacterized LOC9271609

cation cation antiporter

uncharacterized LOC8060602

Membrane fusion protein Use1

uncharacterized LOC100812755

uncharacterized LOC100811568

putative membrane fusion protein Use1

uncharacterized LOC101252142

uncharacterized LOC101246592

uncharacterized LOC103841471

uncharacterized LOC100246170

uncharacterized LOC100260177

uncharacterized LOC7490468

uncharacterized LOC25500698

uncharacterized LOC11418616

uncharacterized LOC107914922

uncharacterized LOC107915406

uncharacterized BNAA09G35220D

uncharacterized BNAC08G26520D

uncharacterized LOC102587298

uncharacterized LOC102583810

uncharacterized LOC102608784

uncharacterized LOC107793376

uncharacterized LOC107786363

uncharacterized LOC107770677

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03020	RNA polymerase	5
tae03008	Ribosome biogenesis in eukaryotes	3
tae03030	DNA replication	3
tae03410	Base excision repair	3
tae03450	Non-homologous end-joining	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	3
hvu00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03020	RNA polymerase	3
osa03420	Nucleotide excision repair	3
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	4
zma00790	Folate biosynthesis	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3
sbi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04130	SNARE interactions in vesicular transport	4
ath03022	Basal transcription factors	2
ath03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	2
gma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	3
bra04130	SNARE interactions in vesicular transport	2
bra00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04130	SNARE interactions in vesicular transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04130	SNARE interactions in vesicular transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	10
ghi04130	SNARE interactions in vesicular transport	4
ghi03083	Polycomb repressive complex	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	6
ghi04130	SNARE interactions in vesicular transport	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04130	SNARE interactions in vesicular transport	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04130	SNARE interactions in vesicular transport	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04130	SNARE interactions in vesicular transport	3
nta00100	Steroid biosynthesis	2
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	4
nta04130	SNARE interactions in vesicular transport	3
nta04016	MAPK signaling pathway - plant	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04130	SNARE interactions in vesicular transport	3
nta04144	Endocytosis	2
nta04712	Circadian rhythm - plant	2

Expression

Expression pattern

Entrez Gene ID^*

100821950

123168125

123143309

123409658

9269842

4346146

9271609

100282041

100285634

8060602

824725

841850

100812755

100811568

100793814

101252142

101246592

103841471

100246170

100260177

7490468

25500698

11418616

107914922

107915406

106412215

106360783

102587298

102583810

102608784

107793376

107786363

107770677

The preparation time of this page was 0.1 [sec].


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	3	1	3	2	1	2	3	2	1	2	1	2	2	2	2	1	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100821950 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100821950 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**