ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100824473	synaptotagmin-3
bdi-r.1	100836784	synaptotagmin-2
bdi-r.1	100834146	synaptotagmin-2
tae-r.2	123112882	synaptotagmin-2
tae-r.2	123104610	synaptotagmin-2
tae-r.2	123104612	synaptotagmin-2
hvu-r.1	123400167	synaptotagmin-2-like
hvu-r.1	123412720	synaptotagmin-3-like
osa-u.5	4327448	synaptotagmin-2
osa-u.5	4329259	synaptotagmin-2
osa-u.5	4341880	synaptotagmin-3
zma-u.5	103634452	synaptotagmin-1
zma-u.5	103626330	synaptotagmin-3
zma-u.5	100192771	uncharacterized LOC100192771
sbi-r.1	8063320	synaptotagmin-1
sbi-r.1	8086287	synaptotagmin-1
sbi-r.1	8077742	synaptotagmin-3
ath-u.5	SYTA	synaptotagmin A
gma-u.5	100820475	synaptotagmin-2
gma-u.5	100819310	synaptotagmin-3
gma-u.5	100813029	synaptotagmin-3
sly-u.5	101264564	synaptotagmin-1
sly-u.5	101249535	synaptotagmin-1
sly-u.5	101245487	synaptotagmin-3
bra-r.6	103829452	synaptotagmin-2
vvi-u.5	100258229	synaptotagmin-3
ppo-u.5	7463439	synaptotagmin-3
ppo-u.5	7490635	synaptotagmin-2
ppo-u.5	7493981	synaptotagmin-2
mtr-u.5	11414595	synaptotagmin-2
mtr-u.5	11422973	synaptotagmin-3
mtr-u.5	25492772	synaptotagmin-2
ghi-r.1	107908926	synaptotagmin-1
ghi-r.1	107910707	synaptotagmin-2
bna-r.1	106372524	synaptotagmin-3
bna-r.1	106372679	synaptotagmin-3
sot-r.1	102593497	synaptotagmin-3-like
sot-r.1	102597682	synaptotagmin-1-like
cit-r.1	102607091	synaptotagmin-1
cit-r.1	102608152	synaptotagmin-3
nta-r.1	107778769	synaptotagmin-3
nta-r.1	107814771	synaptotagmin-3
nta-r.1	107815237	synaptotagmin-3
cre-r.1	CHLRE_01g044650v5	uncharacterized protein
cre-r.1	CHLRE_01g044600v5	uncharacterized protein

Top 50 coexpressed genes to 100824473 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100824473 (bdi-r.1 coexpression data)

CoexMap"100824473"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005783 [list] [network] endoplasmic reticulum

(470 genes)

IEA

GO MF

GO:0008289 [list] [network] lipid binding

(236 genes)

IEA

Protein

XP_003563444.1 [sequence] [blastp]
XP_024312429.1 [sequence] [blastp]
XP_024312430.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, extr 1, nucl 1, mito 1, plas 1, vacu 1, nucl_plas 1, mito_plas 1	(predict for XP_003563444.1)
cyto 6, chlo 1, E.R. 1, pero 1, cysk 1, chlo_mito 1	(predict for XP_024312429.1)
cyto 6, chlo 1, E.R. 1, pero 1, cysk 1, chlo_mito 1	(predict for XP_024312430.1)

Subcellular
localization
TargetP

scret 5, mito 5	(predict for XP_003563444.1)
other 7, mito 3	(predict for XP_024312429.1)
other 7, mito 3	(predict for XP_024312430.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100824473	bdi-r.1 for 100836784	bdi-r.1 for 100834146	tae-r.2 for 123112882	tae-r.2 for 123104610	tae-r.2 for 123104612	hvu-r.1 for 123400167	hvu-r.1 for 123412720	osa-u.5 for 4327448	osa-u.5 for 4329259	osa-u.5 for 4341880	zma-u.5 for 103634452	zma-u.5 for 103626330	zma-u.5 for 100192771	sbi-r.1 for 8063320	sbi-r.1 for 8086287	sbi-r.1 for 8077742	ath-u.5 for SYTA	gma-u.5 for 100820475	gma-u.5 for 100819310	gma-u.5 for 100813029	sly-u.5 for 101264564	sly-u.5 for 101249535	sly-u.5 for 101245487	bra-r.6 for 103829452	vvi-u.5 for 100258229	ppo-u.5 for 7463439	ppo-u.5 for 7490635	ppo-u.5 for 7493981	mtr-u.5 for 11414595	mtr-u.5 for 11422973	mtr-u.5 for 25492772	ghi-r.1 for 107908926	ghi-r.1 for 107910707	bna-r.1 for 106372524	bna-r.1 for 106372679	sot-r.1 for 102593497	sot-r.1 for 102597682	cit-r.1 for 102607091	cit-r.1 for 102608152	nta-r.1 for 107778769	nta-r.1 for 107814771	nta-r.1 for 107815237	cre-r.1 for CHLRE_01g044650v5	cre-r.1 for CHLRE_01g044600v5

Ortholog

Ortholog ID: 864

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

SYTA

SYTC

Function^*

synaptotagmin-3

synaptotagmin-2

synaptotagmin-3

synaptotagmin-2-like

synaptotagmin-3-like

synaptotagmin-2

synaptotagmin-1

synaptotagmin-3

uncharacterized LOC100192771

synaptotagmin-1

synaptotagmin-3

synaptotagmin A

Calcium-dependent lipid-binding (CaLB domain) family protein

synaptotagmin-3

synaptotagmin-2

synaptotagmin-1

synaptotagmin-3

synaptotagmin-1

synaptotagmin-3

synaptotagmin-2

synaptotagmin-3

synaptotagmin-2

synaptotagmin-1

synaptotagmin-2

synaptotagmin-1

synaptotagmin-3-like

synaptotagmin-1-like

synaptotagmin-1

synaptotagmin-3

synaptotagmin-1

synaptotagmin-1-like

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00900	Terpenoid backbone biosynthesis	6
tae03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00061	Fatty acid biosynthesis	3
tae00071	Fatty acid degradation	3
tae01212	Fatty acid metabolism	3
tae04146	Peroxisome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	2
tae00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00410	beta-Alanine metabolism	2
hvu00640	Propanoate metabolism	2
hvu00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	6
hvu00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
hvu00260	Glycine, serine and threonine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	5
osa00190	Oxidative phosphorylation	2
osa04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00480	Glutathione metabolism	3
zma04144	Endocytosis	2
zma00270	Cysteine and methionine metabolism	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	3
sbi04145	Phagosome	3
sbi04120	Ubiquitin mediated proteolysis	2
sbi04141	Protein processing in endoplasmic reticulum	2
sbi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2
sbi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	10
ath04145	Phagosome	10
ath04142	Lysosome	3
ath00010	Glycolysis / Gluconeogenesis	2
ath00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	2
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01240	Biosynthesis of cofactors	4
gma00620	Pyruvate metabolism	4
gma01200	Carbon metabolism	4
gma00940	Phenylpropanoid biosynthesis	4
gma00061	Fatty acid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04145	Phagosome	5
gma00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	3
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00564	Glycerophospholipid metabolism	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00480	Glutathione metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01200	Carbon metabolism	2
sot00561	Glycerolipid metabolism	2
sot00310	Lysine degradation	2
sot00010	Glycolysis / Gluconeogenesis	2
sot00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01200	Carbon metabolism	4
cit01230	Biosynthesis of amino acids	4
cit00010	Glycolysis / Gluconeogenesis	3
cit00710	Carbon fixation by Calvin cycle	3
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00860	Porphyrin metabolism	4
nta04141	Protein processing in endoplasmic reticulum	2
nta00904	Diterpenoid biosynthesis	2
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01240	Biosynthesis of cofactors	2

Expression

Expression pattern

Entrez Gene ID^*

100824473

100836784

100834146

123104610

123104612

123161154

123400167

123412720

4327448

4329259

4347715

103634452

103626330

100192771

8063320

8086287

8077742

816633

830301

100819310

100781189

101264564

101249535

101245487

103847319

103842562

100258229

100260940

7463439

7490635

11414595

25492772

11442815

107910707

106415118

106429454

102593497

102597682

102607091

102608152

107820292

107765314

5715642

5715641

The preparation time of this page was 0.2 [sec].


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	3	2	3	3	3	1	3	3	1	1	3	3	2	2	2	2	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100824473 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100824473 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**