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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   104582647   pentatricopeptide repeat-containing protein At2g20540-like 
 hvu-r.1   123446316   pentatricopeptide repeat-containing protein At1g09190-like 
 osa-u.5   9268630   pentatricopeptide repeat-containing protein At2g20540 
 osa-u.5   4351099   pentatricopeptide repeat-containing protein At1g09190 
 zma-u.5   100280409   uncharacterized LOC100280409 
 sbi-r.1   8082854   pentatricopeptide repeat-containing protein At2g20540 
 ath-u.5   AT1G09190   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100805000   pentatricopeptide repeat-containing protein At1g09190 
 sly-u.5   101244713   pentatricopeptide repeat-containing protein 
 sly-u.5   101247663   pentatricopeptide repeat-containing protein At2g20540 
 bra-r.6   103842597   pentatricopeptide repeat-containing protein At2g20540 
 bra-r.6   103871648   pentatricopeptide repeat-containing protein At1g09190 
 mtr-u.5   11432005   pentatricopeptide repeat-containing protein At2g20540 
 mtr-u.5   11407190   pentatricopeptide repeat-containing protein At1g09190 
 ghi-r.1   107887002   pentatricopeptide repeat-containing protein At1g09190 
 ghi-r.1   107927178   pentatricopeptide repeat-containing protein At1g09190 
 sot-r.1   102580133   pentatricopeptide repeat-containing protein At2g20540-like 
 sot-r.1   102602131   pentatricopeptide repeat-containing protein At1g09190 
 cit-r.1   102621282   pentatricopeptide repeat-containing protein At2g20540 
 cit-r.1   102617057   pentatricopeptide repeat-containing protein At1g09190 
 nta-r.1   107825572   pentatricopeptide repeat-containing protein At2g20540-like 
 nta-r.1   107783794   pentatricopeptide repeat-containing protein At1g09190-like 
 nta-r.1   107761641   pentatricopeptide repeat-containing protein At1g09190-like 

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Top 50 coexpressed genes to 104582647 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 104582647 (bdi-r.1 coexpression data)

CoexMap"100824840"


bdiLOC100824840 | Entrez gene ID : 100824840      
Species bdi hvu osa zma sbi ath gma sly bra mtr ghi sot cit nta cre ppo tae bna vvi
Paralog 1 1 2 1 1 1 1 2 2 2 2 2 2 3 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (384 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1239 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4040 genes)  IEA  
Protein XP_003577241.3 [sequence] [blastp]
XP_014758001.1 [sequence] [blastp]
XP_024318700.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto_nucl 5,  cyto 1  (predict for XP_003577241.3)
nucl 8,  cyto_nucl 5,  cyto 1  (predict for XP_014758001.1)
nucl 8,  cyto_nucl 5,  cyto 1  (predict for XP_024318700.1)
Subcellular
localization
TargetP
chlo 9,  other 3  (predict for XP_003577241.3)
chlo 9,  other 3  (predict for XP_014758001.1)
chlo 9,  other 3  (predict for XP_024318700.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
104582647
hvu-r.1
for
123446316
osa-u.5
for
9268630
osa-u.5
for
4351099
zma-u.5
for
100280409
sbi-r.1
for
8082854
ath-u.5
for
AT1G09190
gma-u.5
for
100805000
sly-u.5
for
101244713
sly-u.5
for
101247663
bra-r.6
for
103842597
bra-r.6
for
103871648
mtr-u.5
for
11432005
mtr-u.5
for
11407190
ghi-r.1
for
107887002
ghi-r.1
for
107927178
sot-r.1
for
102580133
sot-r.1
for
102602131
cit-r.1
for
102621282
cit-r.1
for
102617057
nta-r.1
for
107825572
nta-r.1
for
107783794
nta-r.1
for
107761641


Ortholog ID: 4040
Species bdi hvu osa osa zma sbi ath gma sly sly bra bra mtr mtr ghi ghi sot sot cit cit nta nta nta
Symbol LOC104582647 LOC123446316 LOC9268630 LOC4351099 LOC100280409 LOC8082854 AT1G09190 LOC100805000 LOC101244713 LOC101247663 LOC103842597 LOC103871648 LOC11432005 LOC11407190 LOC107887002 LOC107927178 LOC102580133 LOC102602131 LOC102621282 LOC102617057 LOC107825572 LOC107783794 LOC107796196
Function* pentatricopeptide repeat-containing protein At2g20540-like pentatricopeptide repeat-containing protein At1g09190-like pentatricopeptide repeat-containing protein At2g20540 pentatricopeptide repeat-containing protein At1g09190 uncharacterized LOC100280409 pentatricopeptide repeat-containing protein At2g20540 Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At1g09190 pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At2g20540 pentatricopeptide repeat-containing protein At2g20540 pentatricopeptide repeat-containing protein At1g09190 pentatricopeptide repeat-containing protein At2g20540 pentatricopeptide repeat-containing protein At1g09190 pentatricopeptide repeat-containing protein At1g09190 pentatricopeptide repeat-containing protein At1g09190 pentatricopeptide repeat-containing protein At2g20540-like pentatricopeptide repeat-containing protein At1g09190 pentatricopeptide repeat-containing protein At2g20540 pentatricopeptide repeat-containing protein At1g09190 pentatricopeptide repeat-containing protein At2g20540-like pentatricopeptide repeat-containing protein At1g09190-like pentatricopeptide repeat-containing protein At2g20540
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
sbi00280 Valine, leucine and isoleucine degradation 2
sbi00410 beta-Alanine metabolism 2
sbi00640 Propanoate metabolism 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03082 ATP-dependent chromatin remodeling 2
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 2
nta00906 Carotenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 104582647 123446316 9268630 4351099 100280409 8082854 837439 100805000 101244713 101247663 103842597 103871648 11432005 11407190 107887002 107927178 102580133 102602131 102621282 102617057 107825572 107783794 107796196
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