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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100824962   CRM-domain containing factor CFM2, chloroplastic 
 bdi-r.1   100835466   CRM-domain containing factor CFM3, chloroplastic/mitochondrial 
 bdi-r.1   100822894   CRM-domain containing factor CFM3, chloroplastic/mitochondrial 
 tae-r.2   123111790   CRM-domain containing factor CFM3, chloroplastic/mitochondrial 
 tae-r.2   123045696   CRM-domain containing factor CFM2, chloroplastic 
 tae-r.2   123053568   CRM-domain containing factor CFM2, chloroplastic 
 hvu-r.1   123395917   CRM-domain containing factor CFM3, chloroplastic/mitochondrial-like 
 hvu-r.1   123408595   CRM-domain containing factor CFM3, chloroplastic/mitochondrial-like 
 hvu-r.1   123426943   CRM-domain containing factor CFM2, chloroplastic 
 osa-u.5   4336085   CRM-domain containing factor CFM2, chloroplastic 
 osa-u.5   4350825   CRM-domain containing factor CFM3, chloroplastic/mitochondrial-like 
 osa-u.5   4346858   CRM-domain containing factor CFM3, chloroplastic/mitochondrial 
 zma-u.5   109939195   CRM-domain containing factor CFM2, chloroplastic 
 zma-u.5   103632644   CRM-domain containing factor CFM3, chloroplastic/mitochondrial 
 zma-u.5   100126360   CRM family member 3 
 sbi-r.1   8057493   CRM-domain containing factor CFM2, chloroplastic 
 sbi-r.1   8055576   CRM-domain containing factor CFM3, chloroplastic/mitochondrial 
 sbi-r.1   8071989   CRM-domain containing factor CFM3, chloroplastic/mitochondrial 
 ath-u.5   CFM2   CRM family member 2 
 ath-u.5   CFM3A   CRM family member 3A 
 ath-u.5   CFM3B   CRM family member 3B 
 gma-u.5   100796394   CRM-domain containing factor CFM3A, chloroplastic/mitochondrial 
 gma-u.5   100800252   CRM-domain containing factor CFM2, chloroplastic 
 gma-u.5   100808024   CRM-domain containing factor CFM3, chloroplastic/mitochondrial 
 sly-u.5   101267912   CRM-domain containing factor CFM3, chloroplastic/mitochondrial 
 sly-u.5   101244612   CRM-domain containing factor CFM3A, chloroplastic/mitochondrial-like 
 sly-u.5   101267759   CRM-domain containing factor CFM2, chloroplastic 
 bra-r.6   117132876   protein CROWDED NUCLEI 4 
 bra-r.6   103861908   CRM-domain containing factor CFM3, chloroplastic/mitochondrial 
 vvi-u.5   100268128   CRM-domain containing factor CFM2, chloroplastic 
 vvi-u.5   100257970   CRM-domain containing factor CFM3A, chloroplastic/mitochondrial 
 vvi-u.5   100247581   CRM-domain containing factor CFM3, chloroplastic/mitochondrial 
 ppo-u.5   18095304   CRM-domain containing factor CFM2, chloroplastic 
 ppo-u.5   7498034   CRM-domain containing factor CFM3A, chloroplastic/mitochondrial 
 ppo-u.5   7497609   uncharacterized LOC7497609 
 mtr-u.5   11421806   CRM-domain containing factor CFM2, chloroplastic 
 mtr-u.5   11431284   CRM-domain containing factor CFM3A, chloroplastic/mitochondrial 
 mtr-u.5   25494227   CRM-domain containing factor CFM3, chloroplastic/mitochondrial 
 ghi-r.1   107887243   CRM-domain containing factor CFM3, chloroplastic/mitochondrial 
 ghi-r.1   107901105   CRM-domain containing factor CFM3A, chloroplastic/mitochondrial 
 ghi-r.1   107926256   CRM-domain containing factor CFM3A, chloroplastic/mitochondrial 
 bna-r.1   125587600   CRM-domain containing factor CFM2, chloroplastic-like 
 bna-r.1   106367509   CRM-domain containing factor CFM3A, chloroplastic/mitochondrial-like 
 bna-r.1   106345413   CRM-domain containing factor CFM2, chloroplastic 
 sot-r.1   102590119   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic-like 
 sot-r.1   102589056   chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic 
 cit-r.1   102628064   CRM-domain containing factor CFM2, chloroplastic 
 cit-r.1   102612962   CRM-domain containing factor CFM3, chloroplastic/mitochondrial 
 cit-r.1   102617331   CRM-domain containing factor CFM3A, chloroplastic/mitochondrial-like 
 nta-r.1   107785531   CRM-domain containing factor CFM3A, chloroplastic/mitochondrial 
 nta-r.1   107788869   CRM-domain containing factor CFM3, chloroplastic/mitochondrial 
 nta-r.1   107791199   CRM-domain containing factor CFM3A, chloroplastic/mitochondrial 
 cre-r.1   CHLRE_14g630301v5   uncharacterized protein 

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Top 50 coexpressed genes to 100824962 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100824962 (bdi-r.1 coexpression data)

CoexMap"100824962"


bdiLOC100824962 | Entrez gene ID : 100824962      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 3 3 3 3 3 3 3 3 3 2 3 3 3 3 3 2 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000375 [list] [network] RNA splicing, via transesterification reactions  (178 genes)  IEA  
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (271 genes)  IEA  
Protein XP_010239997.1 [sequence] [blastp]
XP_014751564.1 [sequence] [blastp]
XP_014751565.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 4,  plas 1,  pero 1  (predict for XP_010239997.1)
chlo 5,  nucl 3,  plas 1,  E.R. 1,  pero 1,  E.R._plas 1  (predict for XP_014751564.1)
chlo 5,  nucl 3,  plas 1,  E.R. 1,  pero 1,  E.R._plas 1  (predict for XP_014751565.1)
Subcellular
localization
TargetP
chlo 5  (predict for XP_010239997.1)
chlo 5  (predict for XP_014751564.1)
chlo 5  (predict for XP_014751565.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100824962
bdi-r.1
for
100835466
bdi-r.1
for
100822894
tae-r.2
for
123111790
tae-r.2
for
123045696
tae-r.2
for
123053568
hvu-r.1
for
123395917
hvu-r.1
for
123408595
hvu-r.1
for
123426943
osa-u.5
for
4336085
osa-u.5
for
4350825
osa-u.5
for
4346858
zma-u.5
for
109939195
zma-u.5
for
103632644
zma-u.5
for
100126360
sbi-r.1
for
8057493
sbi-r.1
for
8055576
sbi-r.1
for
8071989
ath-u.5
for
CFM2
ath-u.5
for
CFM3A
ath-u.5
for
CFM3B
gma-u.5
for
100796394
gma-u.5
for
100800252
gma-u.5
for
100808024
sly-u.5
for
101267912
sly-u.5
for
101244612
sly-u.5
for
101267759
bra-r.6
for
117132876
bra-r.6
for
103861908
vvi-u.5
for
100268128
vvi-u.5
for
100257970
vvi-u.5
for
100247581
ppo-u.5
for
18095304
ppo-u.5
for
7498034
ppo-u.5
for
7497609
mtr-u.5
for
11421806
mtr-u.5
for
11431284
mtr-u.5
for
25494227
ghi-r.1
for
107887243
ghi-r.1
for
107901105
ghi-r.1
for
107926256
bna-r.1
for
125587600
bna-r.1
for
106367509
bna-r.1
for
106345413
sot-r.1
for
102590119
sot-r.1
for
102589056
cit-r.1
for
102628064
cit-r.1
for
102612962
cit-r.1
for
102617331
nta-r.1
for
107785531
nta-r.1
for
107788869
nta-r.1
for
107791199
cre-r.1
for
CHLRE_14g630301v5


Ortholog ID: 1541
Species bdi bdi bdi tae tae tae hvu hvu hvu osa osa osa zma zma zma sbi sbi sbi ath ath ath gma gma gma sly sly sly bra bra vvi vvi vvi ppo ppo ppo mtr mtr mtr ghi ghi ghi bna bna bna sot sot cit cit cit nta nta nta cre
Symbol LOC100824962 LOC100835466 LOC100822894 LOC123045696 LOC123053568 LOC123103564 LOC123395917 LOC123408595 LOC123426943 LOC4336085 LOC4350825 LOC4346858 LOC103632644 LOC100126360 LOC100126359 LOC8057493 LOC8055576 LOC8071989 CFM2 CFM3A AT4G29750 LOC100796394 LOC100808024 LOC121174972 LOC101267912 LOC101244612 LOC101267759 LOC103872052 LOC103870976 LOC100268128 LOC100257970 LOC100247581 LOC18095304 LOC7498034 LOC7497609 LOC11421806 LOC11431284 LOC25494227 LOC107892310 LOC121204859 LOC107888648 LOC106367509 LOC106349064 LOC106437909 LOC102589056 LOC102578249 LOC102628064 LOC102612962 LOC102617331 LOC107785531 LOC107788869 LOC107777837 CHLRE_14g630301v5
Function* CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM3, chloroplastic/mitochondrial CRM-domain containing factor CFM3, chloroplastic/mitochondrial CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM3, chloroplastic/mitochondrial CRM-domain containing factor CFM3, chloroplastic/mitochondrial-like CRM-domain containing factor CFM3, chloroplastic/mitochondrial-like CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM3, chloroplastic/mitochondrial-like CRM-domain containing factor CFM3, chloroplastic/mitochondrial CRM-domain containing factor CFM3, chloroplastic/mitochondrial CRM family member 3 CFM family member 2 CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM3, chloroplastic/mitochondrial CRM-domain containing factor CFM3, chloroplastic/mitochondrial CRM family member 2 CRM family member 3A CRS1 / YhbY (CRM) domain-containing protein CRM-domain containing factor CFM3A, chloroplastic/mitochondrial CRM-domain containing factor CFM3, chloroplastic/mitochondrial CRM-domain containing factor CFM2, chloroplastic-like CRM-domain containing factor CFM3, chloroplastic/mitochondrial CRM-domain containing factor CFM3A, chloroplastic/mitochondrial-like CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM3B, chloroplastic CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM3A, chloroplastic/mitochondrial CRM-domain containing factor CFM3, chloroplastic/mitochondrial CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM3A, chloroplastic/mitochondrial uncharacterized LOC7497609 CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM3A, chloroplastic/mitochondrial CRM-domain containing factor CFM3, chloroplastic/mitochondrial CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM3A, chloroplastic/mitochondrial CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM3A, chloroplastic/mitochondrial-like CRM-domain containing factor CFM3B, chloroplastic CRM-domain containing factor CFM3B, chloroplastic chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM3, chloroplastic/mitochondrial CRM-domain containing factor CFM3A, chloroplastic/mitochondrial-like CRM-domain containing factor CFM3A, chloroplastic/mitochondrial CRM-domain containing factor CFM3, chloroplastic/mitochondrial CRM-domain containing factor CFM2, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 2
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 4
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04144 Endocytosis 3
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi03018 RNA degradation 2
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi04120 Ubiquitin mediated proteolysis 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04518 Integrin signaling 2
nta05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100824962 100835466 100822894 123045696 123053568 123103564 123395917 123408595 123426943 4336085 4350825 4346858 103632644 100126360 100126359 8057493 8055576 8071989 821288 821881 829097 100796394 100808024 121174972 101267912 101244612 101267759 103872052 103870976 100268128 100257970 100247581 18095304 7498034 7497609 11421806 11431284 25494227 107892310 121204859 107888648 106367509 106349064 106437909 102589056 102578249 102628064 102612962 102617331 107785531 107788869 107777837 5718253
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