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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_14g630301v5   uncharacterized protein 
 ath-u.5   CFM2   CRM family member 2 
 ath-u.5   CFM3A   CRM family member 3A 
 ath-u.5   CFM3B   CRM family member 3B 
 gma-u.5   100800252   CRM-domain containing factor CFM2, chloroplastic 
 gma-u.5   100799724   CRM-domain containing factor CFM2, chloroplastic 
 gma-u.5   100796394   CRM-domain containing factor CFM3A, chloroplastic/mitochondrial 
 sly-u.5   101267912   CRM-domain containing factor CFM3, chloroplastic/mitochondrial 
 sly-u.5   101267759   CRM-domain containing factor CFM2, chloroplastic 
 sly-u.5   101244612   CRM-domain containing factor CFM3A, chloroplastic/mitochondrial-like 
 osa-u.5   4350825   CRM-domain containing factor CFM3, chloroplastic/mitochondrial-like 
 osa-u.5   4346858   CRM-domain containing factor CFM3, chloroplastic/mitochondrial 
 osa-u.5   4336085   CRM-domain containing factor CFM2, chloroplastic 
 zma-u.5   109939195   CRM-domain containing factor CFM2, chloroplastic 
 zma-u.5   103632644   CRM-domain containing factor CFM3, chloroplastic/mitochondrial 
 zma-u.5   100126360   CRM family member 3 
 vvi-u.5   100247581   CRM-domain containing factor CFM3, chloroplastic/mitochondrial 
 vvi-u.5   100268128   CRM-domain containing factor CFM2, chloroplastic 
 vvi-u.5   100257970   CRM-domain containing factor CFM3A, chloroplastic/mitochondrial 
 ppo-u.5   18095304   CRM-domain containing factor CFM2, chloroplastic 
 ppo-u.5   7498034   CRM-domain containing factor CFM3A, chloroplastic/mitochondrial 
 ppo-u.5   7497609   uncharacterized LOC7497609 
 mtr-u.5   11421806   CRM-domain containing factor CFM2, chloroplastic 
 mtr-u.5   11431284   CRM-domain containing factor CFM3A, chloroplastic/mitochondrial 
 mtr-u.5   25494227   CRM-domain containing factor CFM3, chloroplastic/mitochondrial 

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Top 50 coexpressed genes to CHLRE_14g630301v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_14g630301v5 (cre-r.1 coexpression data)

CoexMap"5718253"


creCHLRE_14g630301v5 | Entrez gene ID : 5718253    
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 3 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000375 [list] [network] RNA splicing, via transesterification reactions  (104 genes)  IEA  
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (109 genes)  IEA  
Protein XP_042917045.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  mito 1  (predict for XP_042917045.1)
Subcellular
localization
TargetP
mito 8,  chlo 3  (predict for XP_042917045.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_14g630301v5

.
ath-u.5
for
CFM2

.
ath-u.5
for
CFM3A

.
ath-u.5
for
CFM3B

.
gma-u.5
for
100800252

.
gma-u.5
for
100799724

.
gma-u.5
for
100796394

.
sly-u.5
for
101267912

.
sly-u.5
for
101267759

.
sly-u.5
for
101244612

.
osa-u.5
for
4350825

.
osa-u.5
for
4346858

.
osa-u.5
for
4336085

.
zma-u.5
for
109939195

.
zma-u.5
for
103632644

.
zma-u.5
for
100126360

.
vvi-u.5
for
100247581

.
vvi-u.5
for
100268128

.
vvi-u.5
for
100257970

.
ppo-u.5
for
18095304

.
ppo-u.5
for
7498034

.
ppo-u.5
for
7497609

.
mtr-u.5
for
11421806

.
mtr-u.5
for
11431284

.
mtr-u.5
for
25494227

.


Ortholog ID: 1541
Species ath ath gma gma sly sly osa osa zma zma bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot cit cit bdi bdi nta nta
Symbol CFM2 CFM3A LOC100808024 LOC121174972 LOC101267759 LOC101244612 LOC4350825 LOC4336085 LOC103632644 LOC100126359 LOC103870976 LOC100247581 LOC100268128 LOC7498034 LOC7497609 LOC11421806 LOC11431284 LOC123053568 LOC123045696 LOC123395917 LOC123426943 LOC107888648 LOC107892310 LOC106349064 LOC106367509 CHLRE_14g630301v5 LOC8055576 LOC8071989 LOC102578249 LOC102628064 LOC102612962 LOC100822894 LOC100824962 LOC107777837 LOC107785531
Function* CRM family member 2 CRM family member 3A CRM-domain containing factor CFM3, chloroplastic/mitochondrial CRM-domain containing factor CFM2, chloroplastic-like CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM3A, chloroplastic/mitochondrial-like CRM-domain containing factor CFM3, chloroplastic/mitochondrial-like CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM3, chloroplastic/mitochondrial CFM family member 2 CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM3, chloroplastic/mitochondrial CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM3A, chloroplastic/mitochondrial uncharacterized LOC7497609 CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM3A, chloroplastic/mitochondrial CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM3, chloroplastic/mitochondrial-like CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM3B, chloroplastic CRM-domain containing factor CFM3A, chloroplastic/mitochondrial-like uncharacterized protein CRM-domain containing factor CFM3, chloroplastic/mitochondrial CRM-domain containing factor CFM3, chloroplastic/mitochondrial chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM3, chloroplastic/mitochondrial CRM-domain containing factor CFM3, chloroplastic/mitochondrial CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM2, chloroplastic CRM-domain containing factor CFM3A, chloroplastic/mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 2
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi04120 Ubiquitin mediated proteolysis 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi03018 RNA degradation 2
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 2
nta04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04518 Integrin signaling 2
nta05100 Bacterial invasion of epithelial cells 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821288 821881 100808024 121174972 101267759 101244612 4350825 4336085 103632644 100126359 103870976 100247581 100268128 7498034 7497609 11421806 11431284 123053568 123045696 123395917 123426943 107888648 107892310 106349064 106367509 5718253 8055576 8071989 102578249 102628064 102612962 100822894 100824962 107777837 107785531
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