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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100826882   exosome complex component RRP42 
 bdi-r.1   100845366   exosome complex component RRP42 
 tae-r.2   123147409   exosome complex component RRP42 
 tae-r.2   123160300   exosome complex component RRP42 
 tae-r.2   123168189   exosome complex component RRP42 
 hvu-r.1   123409844   exosome complex component RRP42 
 osa-u.5   4352037   uncharacterized LOC4352037 
 zma-u.5   118471885   exosome complex component RRP42-like 
 zma-u.5   103626486   exosome complex component RRP42-like 
 zma-u.5   100856959   exosome complex exonuclease RRP42 
 sbi-r.1   110430480   putative exosome complex exonuclease RRP42 
 sbi-r.1   8069238   exosome complex component RRP42 
 sbi-r.1   8084787   exosome complex component RRP42 
 ath-u.5   AT3G07750   3'-5'-exoribonuclease family protein 
 gma-u.5   100818134   exosome complex component RRP42 
 gma-u.5   100806953   exosome complex component RRP42 
 sly-u.5   101268414   uncharacterized LOC101268414 
 bra-r.6   103870639   exosome complex component RRP42 
 vvi-u.5   100261229   uncharacterized LOC100261229 
 ppo-u.5   7456004   uncharacterized LOC7456004 
 mtr-u.5   25482505   exosome complex component RRP42 
 mtr-u.5   11406638   exosome complex component RRP42 
 ghi-r.1   121216210   exosome complex component RRP42 
 ghi-r.1   107904275   exosome complex component RRP42 
 bna-r.1   106452880   exosome complex component RRP42-like 
 bna-r.1   106427881   exosome complex component RRP42 
 bna-r.1   125587739   exosome complex component RRP42-like 
 sot-r.1   102606240   exosome complex exonuclease RRP42 
 cit-r.1   102629532   uncharacterized LOC102629532 
 nta-r.1   107801111   uncharacterized LOC107801111 
 nta-r.1   107782269   uncharacterized LOC107782269 
 cre-r.1   CHLRE_03g188200v5   uncharacterized protein 

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Top 50 coexpressed genes to 100826882 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100826882 (bdi-r.1 coexpression data)

CoexMap"100826882"


bdiLOC100826882 | Entrez gene ID : 100826882      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 2 3 1 1 3 3 1 2 1 1 1 1 2 2 3 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG bdi03018 [list] [network] RNA degradation (115 genes)
GO BP
GO:0034473 [list] [network] U1 snRNA 3'-end processing  (4 genes)  IEA  
GO:0034476 [list] [network] U5 snRNA 3'-end processing  (4 genes)  IEA  
GO:0071042 [list] [network] nuclear polyadenylation-dependent mRNA catabolic process  (4 genes)  IEA  
GO:0071028 [list] [network] nuclear mRNA surveillance  (7 genes)  IEA  
GO:0034475 [list] [network] U4 snRNA 3'-end processing  (10 genes)  IEA  
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process  (10 genes)  IEA  
GO:0071038 [list] [network] TRAMP-dependent tRNA surveillance pathway  (10 genes)  IEA  
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (14 genes)  IEA  
GO CC
GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)  (11 genes)  IEA  
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (15 genes)  IEA  
GO MF
Protein XP_003573518.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  cyto 3,  pero 3,  cyto_pero 3  (predict for XP_003573518.1)
Subcellular
localization
TargetP
other 6  (predict for XP_003573518.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100826882
bdi-r.1
for
100845366
tae-r.2
for
123147409
tae-r.2
for
123160300
tae-r.2
for
123168189
hvu-r.1
for
123409844
osa-u.5
for
4352037
zma-u.5
for
118471885
zma-u.5
for
103626486
zma-u.5
for
100856959
sbi-r.1
for
110430480
sbi-r.1
for
8069238
sbi-r.1
for
8084787
ath-u.5
for
AT3G07750
gma-u.5
for
100818134
gma-u.5
for
100806953
sly-u.5
for
101268414
bra-r.6
for
103870639
vvi-u.5
for
100261229
ppo-u.5
for
7456004
mtr-u.5
for
25482505
mtr-u.5
for
11406638
ghi-r.1
for
121216210
ghi-r.1
for
107904275
bna-r.1
for
106452880
bna-r.1
for
106427881
bna-r.1
for
125587739
sot-r.1
for
102606240
cit-r.1
for
102629532
nta-r.1
for
107801111
nta-r.1
for
107782269
cre-r.1
for
CHLRE_03g188200v5


Ortholog ID: 6257
Species bdi bdi tae tae tae hvu osa zma zma zma sbi sbi sbi ath gma gma sly bra vvi ppo mtr mtr ghi ghi bna bna bna sot cit nta nta cre
Symbol LOC100826882 LOC100845366 LOC123147409 LOC123160300 LOC123168189 LOC123409844 LOC4352037 LOC118471885 LOC103626486 LOC100856959 LOC110430480 LOC8069238 LOC8084787 AT3G07750 LOC100818134 LOC100806953 LOC101268414 LOC103870639 LOC100261229 LOC7456004 LOC25482505 LOC11406638 LOC121216210 LOC107904275 LOC106452880 LOC125587739 LOC106401927 LOC102606240 LOC102629532 LOC107801111 LOC107782269 CHLRE_03g188200v5
Function* exosome complex component RRP42 exosome complex component RRP42 exosome complex component RRP42 exosome complex component RRP42 exosome complex component RRP42 exosome complex component RRP42 uncharacterized LOC4352037 exosome complex component RRP42-like exosome complex component RRP42-like exosome complex exonuclease RRP42 putative exosome complex exonuclease RRP42 exosome complex component RRP42 exosome complex component RRP42 3'-5'-exoribonuclease family protein exosome complex component RRP42 exosome complex component RRP42 uncharacterized LOC101268414 exosome complex component RRP42 uncharacterized LOC100261229 uncharacterized LOC7456004 exosome complex component RRP42 exosome complex component RRP42 exosome complex component RRP42 exosome complex component RRP42 exosome complex component RRP42-like exosome complex component RRP42-like exosome complex component RRP42-like exosome complex exonuclease RRP42 uncharacterized LOC102629532 uncharacterized LOC107801111 uncharacterized LOC107782269 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
bdi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 7
bdi03018 RNA degradation 2
bdi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa00970 Aminoacyl-tRNA biosynthesis 2
osa03020 RNA polymerase 2
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
sbi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
sbi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
sbi03018 RNA degradation 3
sbi03410 Base excision repair 2
sbi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
gma03018 RNA degradation 2
gma00790 Folate biosynthesis 2
gma01240 Biosynthesis of cofactors 2
gma04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 13
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 8
sly03410 Base excision repair 2
sly03018 RNA degradation 2
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi03015 mRNA surveillance pathway 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo01240 Biosynthesis of cofactors 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr03018 RNA degradation 4
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 10
mtr03040 Spliceosome 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi03018 RNA degradation 4
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
ghi03018 RNA degradation 4
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta04141 Protein processing in endoplasmic reticulum 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03010 Ribosome 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100826882 100845366 123147409 123160300 123168189 123409844 4352037 118471885 103626486 100856959 110430480 8069238 8084787 819966 100818134 100806953 101268414 103870639 100261229 7456004 25482505 11406638 121216210 107904275 106452880 125587739 106401927 102606240 102629532 107801111 107782269 66052931
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