ATTED-II : GeneCoexpression result

Species	Gene	Description
bdi-r.1	100821108	polygalacturonase At1g48100
tae-r.2	123070193	polygalacturonase At1g48100
hvu-r.1	123443940	polygalacturonase At1g48100-like
hvu-r.1	123451668	polygalacturonase At1g48100-like
osa-u.5	4326573	polygalacturonase At1g48100
osa-u.5	4339708	polygalacturonase At1g48100
zma-u.5	100273736	uncharacterized LOC100273736
zma-u.5	100284545	polygalacturonase
zma-u.5	100282388	polygalacturonase
sbi-r.1	8064720	polygalacturonase At1g48100
sbi-r.1	8054932	polygalacturonase At1g48100
ath-u.5	AT5G14650	Pectin lyase-like superfamily protein
ath-u.5	AT1G10640	Pectin lyase-like superfamily protein
ath-u.5	AT1G60590	Pectin lyase-like superfamily protein
gma-u.5	547542	polygalacturonase PG1
gma-u.5	547543	polygalacturonase PG2
gma-u.5	732602	polygalacturonase At1g48100
sly-u.5	101246713	polygalacturonase At1g48100-like
bra-r.6	103838503	polygalacturonase At1g48100
bra-r.6	103843286	polygalacturonase At1g48100
bra-r.6	103846471	polygalacturonase At1g48100
vvi-u.5	100241353	polygalacturonase At1g48100
vvi-u.5	100233039	polygalacturonase
ppo-u.5	7492392	polygalacturonase At1g48100
mtr-u.5	25501370	polygalacturonase At1g48100
mtr-u.5	11423776	polygalacturonase At1g48100
mtr-u.5	11407103	polygalacturonase At1g48100
ghi-r.1	107886568	polygalacturonase At1g48100
ghi-r.1	107909678	polygalacturonase At1g48100
bna-r.1	106350277	polygalacturonase At1g48100-like
bna-r.1	106357926	polygalacturonase At1g48100
sot-r.1	102586312	polygalacturonase At1g48100
cit-r.1	102609721	polygalacturonase At1g48100
nta-r.1	107806636	polygalacturonase At1g48100

Annotation

functional annotation

KEGG

GO BP

GO:0005975 [list] [network] carbohydrate metabolic process

(658 genes)

IEA

GO CC

GO MF

GO:0004650 [list] [network] polygalacturonase activity

(44 genes)

IEA

Protein

XP_024314509.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 4, nucl 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2

(predict for XP_024314509.1)

Subcellular
localization
TargetP

other 9

(predict for XP_024314509.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100821108	tae-r.2 for 123070193	hvu-r.1 for 123443940	hvu-r.1 for 123451668	osa-u.5 for 4326573	osa-u.5 for 4339708	zma-u.5 for 100273736	zma-u.5 for 100284545	zma-u.5 for 100282388	sbi-r.1 for 8064720	sbi-r.1 for 8054932	ath-u.5 for AT5G14650	ath-u.5 for AT1G10640	ath-u.5 for AT1G60590	gma-u.5 for 547542	gma-u.5 for 547543	gma-u.5 for 732602	sly-u.5 for 101246713	bra-r.6 for 103838503	bra-r.6 for 103843286	bra-r.6 for 103846471	vvi-u.5 for 100241353	vvi-u.5 for 100233039	ppo-u.5 for 7492392	mtr-u.5 for 25501370	mtr-u.5 for 11423776	mtr-u.5 for 11407103	ghi-r.1 for 107886568	ghi-r.1 for 107909678	bna-r.1 for 106350277	bna-r.1 for 106357926	sot-r.1 for 102586312	cit-r.1 for 102609721	nta-r.1 for 107806636

Ortholog

Ortholog ID: 2237

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

polygalacturonase At1g48100

polygalacturonase At1g48100-like

polygalacturonase At1g48100

uncharacterized LOC100273736

polygalacturonase

polygalacturonase At1g48100

Pectin lyase-like superfamily protein

polygalacturonase PG1

polygalacturonase At1g48100

polygalacturonase At1g48100-like

polygalacturonase At1g48100

polygalacturonase

polygalacturonase At1g48100

polygalacturonase At1g48100-like

polygalacturonase At1g48100

polygalacturonase-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00196	Photosynthesis - antenna proteins	4
sbi00860	Porphyrin metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	7
gma04075	Plant hormone signal transduction	3
gma04016	MAPK signaling pathway - plant	2
gma04626	Plant-pathogen interaction	2
gma00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	3
bra00710	Carbon fixation by Calvin cycle	2
bra00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00511	Other glycan degradation	2
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00511	Other glycan degradation	2
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03020	RNA polymerase	2

Expression

Expression pattern

Entrez Gene ID^*

100821108

123061559

123443940

123451668

4326573

4339708

100273736

100284545

100282388

8064720

8054932

831317

837607

842353

547542

732602

100783813

101246713

103838503

103846471

103871846

100241353

100233039

7492392

25501370

11423776

11407103

107909678

107898665

106359419

106419855

102586312

102609721

142163841

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100821108 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100821108 (bdi-r.1 coexpression data)


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	1	2	2	3	2	3	3	1	3	2	1	3	2	2	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100821108 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100821108 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**