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Orthologous genes in OrthoFinder**

Species Gene Description
 bra-r.6   103846471   polygalacturonase At1g48100 
 bra-r.6   103838503   polygalacturonase At1g48100 
 bra-r.6   103843286   polygalacturonase At1g48100 
 bra-r.6   103868082   polygalacturonase At1g48100-like 
 bna-r.1   106350277   polygalacturonase At1g48100-like 
 bna-r.1   106357926   polygalacturonase At1g48100 
 ath-u.5   AT5G14650   Pectin lyase-like superfamily protein 
 ath-u.5   AT1G10640   Pectin lyase-like superfamily protein 
 ath-u.5   AT1G60590   Pectin lyase-like superfamily protein 
 ghi-r.1   107886568   polygalacturonase At1g48100 
 ghi-r.1   107909678   polygalacturonase At1g48100 
 cit-r.1   102609721   polygalacturonase At1g48100 
 gma-u.5   547542   polygalacturonase PG1 
 gma-u.5   547543   polygalacturonase PG2 
 gma-u.5   732602   polygalacturonase At1g48100 
 vvi-u.5   100241353   polygalacturonase At1g48100 
 vvi-u.5   100233039   polygalacturonase 
 ppo-u.5   7492392   polygalacturonase At1g48100 
 mtr-u.5   11423776   polygalacturonase At1g48100 
 mtr-u.5   11407103   polygalacturonase At1g48100 
 mtr-u.5   25501370   polygalacturonase At1g48100 
 sly-u.5   101246713   polygalacturonase At1g48100-like 
 sot-r.1   102586312   polygalacturonase At1g48100 
 nta-r.1   107806636   polygalacturonase At1g48100 
 osa-u.5   4326573   polygalacturonase At1g48100 
 osa-u.5   4339708   polygalacturonase At1g48100 
 zma-u.5   100282388   polygalacturonase 
 zma-u.5   100284545   polygalacturonase 
 zma-u.5   100273736   uncharacterized LOC100273736 
 tae-r.2   123061559   polygalacturonase At1g48100 
 tae-r.2   123070193   polygalacturonase At1g48100 
 hvu-r.1   123443940   polygalacturonase At1g48100-like 
 hvu-r.1   123451668   polygalacturonase At1g48100-like 
 sbi-r.1   8064720   polygalacturonase At1g48100 
 sbi-r.1   8054932   polygalacturonase At1g48100 
 bdi-r.1   100821108   polygalacturonase At1g48100 

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Top 50 coexpressed genes to 103846471 (bra-r.6 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 103846471 (bra-r.6 coexpression data)

CoexMap""


braLOC103846471 | Entrez gene ID : 103846471    
Species bra bna ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 3 2 1 3 2 1 3 1 1 1 2 3 2 2 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
Function polygalacturonase At1g48100
KEGG brp00040 [list] [network] Pentose and glucuronate interconversions (191 genes)
GO BP
GO:0005975 [list] [network] carbohydrate metabolic process  (1073 genes)  IEA  
GO CC
GO MF
GO:0004650 [list] [network] polygalacturonase activity  (106 genes)  IEA  
Protein XP_009121648.1 [sequence] [blastp]
XP_009121649.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  cyto 1,  cyto_nucl 1,  plas 1,  extr 1,  vacu 1,  chlo_mito 1  (predict for XP_009121648.1)
chlo 4,  plas 1,  extr 1,  vacu 1,  cyto_nucl 1,  nucl 1,  cyto 1  (predict for XP_009121649.1)
Subcellular
localization
TargetP
scret 5,  mito 5  (predict for XP_009121648.1)
scret 5,  mito 5  (predict for XP_009121649.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bra-r.6
for
103846471
bra-r.6
for
103838503
bra-r.6
for
103843286
bra-r.6
for
103868082
bna-r.1
for
106350277
bna-r.1
for
106357926
ath-u.5
for
AT5G14650
ath-u.5
for
AT1G10640
ath-u.5
for
AT1G60590
ghi-r.1
for
107886568
ghi-r.1
for
107909678
cit-r.1
for
102609721
gma-u.5
for
547542
gma-u.5
for
547543
gma-u.5
for
732602
vvi-u.5
for
100241353
vvi-u.5
for
100233039
ppo-u.5
for
7492392
mtr-u.5
for
11423776
mtr-u.5
for
11407103
mtr-u.5
for
25501370
sly-u.5
for
101246713
sot-r.1
for
102586312
nta-r.1
for
107806636
osa-u.5
for
4326573
osa-u.5
for
4339708
zma-u.5
for
100282388
zma-u.5
for
100284545
zma-u.5
for
100273736
tae-r.2
for
123061559
tae-r.2
for
123070193
hvu-r.1
for
123443940
hvu-r.1
for
123451668
sbi-r.1
for
8064720
sbi-r.1
for
8054932
bdi-r.1
for
100821108

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Ortholog ID: 2237
Species bra bra bra bna bna ath ath ath ghi ghi cit gma gma gma vvi vvi ppo mtr mtr mtr sly sot nta osa osa zma zma zma tae hvu hvu sbi sbi bdi
Symbol LOC103846471 LOC103838503 LOC103871846 LOC106359419 LOC106419855 AT5G14650 AT1G10640 AT1G60590 LOC107909678 LOC107898665 LOC102609721 LOC547542 LOC732602 LOC100783813 LOC100241353 LOC100233039 LOC7492392 LOC11423776 LOC11407103 LOC25501370 LOC101246713 LOC102586312 LOC142163841 LOC4326573 LOC4339708 LOC100282388 LOC100284545 LOC100273736 LOC123061559 LOC123443940 LOC123451668 LOC8064720 LOC8054932 LOC100821108
Function* polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100-like polygalacturonase At1g48100-like Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein Pectin lyase-like superfamily protein polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase PG1 polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100-like polygalacturonase At1g48100 polygalacturonase-like polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase polygalacturonase uncharacterized LOC100273736 polygalacturonase At1g48100 polygalacturonase At1g48100-like polygalacturonase At1g48100-like polygalacturonase At1g48100 polygalacturonase At1g48100 polygalacturonase At1g48100
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 3
bra00710 Carbon fixation by Calvin cycle 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00511 Other glycan degradation 2
ghi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00511 Other glycan degradation 2
ghi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 7
gma04075 Plant hormone signal transduction 3
gma04016 MAPK signaling pathway - plant 2
gma04626 Plant-pathogen interaction 2
gma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 4
sbi00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103846471 103838503 103871846 106359419 106419855 831317 837607 842353 107909678 107898665 102609721 547542 732602 100783813 100241353 100233039 7492392 11423776 11407103 25501370 101246713 102586312 142163841 4326573 4339708 100282388 100284545 100273736 123061559 123443940 123451668 8064720 8054932 100821108
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