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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100830085   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 tae-r.2   123188365   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 tae-r.2   123052484   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 tae-r.2   123044609   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 hvu-r.1   123425795   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 osa-u.5   4343522   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 zma-u.5   111589769   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 zma-u.5   103634329   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 zma-u.5   100282749   uncharacterized LOC100282749 
 sbi-r.1   8081718   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 ath-u.5   AT4G18975   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100792234   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 sly-u.5   101259397   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 bra-r.6   103857006   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 vvi-u.5   100257195   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 ppo-u.5   18102931   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 mtr-u.5   25488703   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 ghi-r.1   107905845   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 bna-r.1   106431504   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 bna-r.1   106423211   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 sot-r.1   102578676   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 cit-r.1   102615756   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 nta-r.1   107785767   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 

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Top 50 coexpressed genes to 100830085 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100830085 (bdi-r.1 coexpression data)

CoexMap"100830085"


bdiLOC100830085 | Entrez gene ID : 100830085      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 3 1 1 3 1 1 1 1 1 1 1 1 1 2 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4040 genes)  IEA  
Protein XP_003562962.1 [sequence] [blastp]
XP_014752723.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_003562962.1)
cyto 9,  pero 1,  cysk 1  (predict for XP_014752723.1)
Subcellular
localization
TargetP
chlo 6,  mito 4  (predict for XP_003562962.1)
other 7  (predict for XP_014752723.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100830085
tae-r.2
for
123188365
tae-r.2
for
123052484
tae-r.2
for
123044609
hvu-r.1
for
123425795
osa-u.5
for
4343522
zma-u.5
for
111589769
zma-u.5
for
103634329
zma-u.5
for
100282749
sbi-r.1
for
8081718
ath-u.5
for
AT4G18975
gma-u.5
for
100792234
sly-u.5
for
101259397
bra-r.6
for
103857006
vvi-u.5
for
100257195
ppo-u.5
for
18102931
mtr-u.5
for
25488703
ghi-r.1
for
107905845
bna-r.1
for
106431504
bna-r.1
for
106423211
sot-r.1
for
102578676
cit-r.1
for
102615756
nta-r.1
for
107785767


Ortholog ID: 10865
Species bdi tae tae tae hvu osa zma zma zma sbi ath gma sly bra vvi ppo mtr ghi bna bna sot cit nta
Symbol LOC100830085 LOC123188365 LOC123052484 LOC123044609 LOC123425795 LOC4343522 LOC111589769 LOC103634329 LOC100282749 LOC8081718 AT4G18975 LOC100792234 LOC101259397 LOC103857006 LOC100257195 LOC18102931 LOC25488703 LOC107905845 LOC106431504 LOC106423211 LOC102578676 LOC102615756 LOC107785767
Function* pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic uncharacterized LOC100282749 pentatricopeptide repeat-containing protein At4g18975, chloroplastic Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 4
gma00562 Inositol phosphate metabolism 2
gma04070 Phosphatidylinositol signaling system 2
gma00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra01200 Carbon metabolism 2
bra00561 Glycerolipid metabolism 2
bra00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 5
bna00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100830085 123188365 123052484 123044609 123425795 4343522 111589769 103634329 100282749 8081718 827633 100792234 101259397 103857006 100257195 18102931 25488703 107905845 106431504 106423211 102578676 102615756 107785767
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