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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107905845   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 ath-u.5   AT4G18975   Pentatricopeptide repeat (PPR) superfamily protein 
 gma-u.5   100792234   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 vvi-u.5   100257195   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 ppo-u.5   18102931   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 mtr-u.5   25488703   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 sly-u.5   101259397   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 osa-u.5   4343522   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 zma-u.5   100282749   uncharacterized LOC100282749 
 zma-u.5   103634329   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 
 zma-u.5   111589769   pentatricopeptide repeat-containing protein At4g18975, chloroplastic 

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Top 50 coexpressed genes to 107905845 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107905845 (ghi-r.1 coexpression data)

CoexMap"107905845"


ghiLOC107905845 | Entrez gene ID : 107905845    
Species ghi ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi sot nta cre tae
Paralog 1 1 1 1 1 1 1 1 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016688104.1 [sequence] [blastp]
XP_016688105.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 3,  mito 2  (predict for XP_016688104.1)
nucl 4,  cyto_nucl 3,  chlo 2,  mito 2,  chlo_mito 2  (predict for XP_016688105.1)
Subcellular
localization
TargetP
mito 4,  other 3  (predict for XP_016688104.1)
mito 4,  other 3  (predict for XP_016688105.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107905845
ath-u.5
for
AT4G18975
gma-u.5
for
100792234
vvi-u.5
for
100257195
ppo-u.5
for
18102931
mtr-u.5
for
25488703
sly-u.5
for
101259397
osa-u.5
for
4343522
zma-u.5
for
100282749
zma-u.5
for
103634329
zma-u.5
for
111589769


Ortholog ID: 10865
Species ghi ath bra bna bna cit gma vvi ppo mtr sly sot nta osa zma zma tae tae hvu sbi bdi
Symbol LOC107905845 AT4G18975 LOC103857006 LOC106431504 LOC106423211 LOC102615756 LOC100792234 LOC100257195 LOC18102931 LOC25488703 LOC101259397 LOC102578676 LOC107785767 LOC4343522 LOC100282749 LOC111589769 LOC123044609 LOC123188365 LOC123425795 LOC8081718 LOC100830085
Function* pentatricopeptide repeat-containing protein At4g18975, chloroplastic Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic uncharacterized LOC100282749 pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic pentatricopeptide repeat-containing protein At4g18975, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra01200 Carbon metabolism 2
bra00561 Glycerolipid metabolism 2
bra00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04146 Peroxisome 5
bna00900 Terpenoid backbone biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 4
gma00562 Inositol phosphate metabolism 2
gma04070 Phosphatidylinositol signaling system 2
gma00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107905845 827633 103857006 106431504 106423211 102615756 100792234 100257195 18102931 25488703 101259397 102578676 107785767 4343522 100282749 111589769 123044609 123188365 123425795 8081718 100830085
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