ATTED-II : GeneCoexpression result

Species	Gene	Description
bdi-r.1	100831951	VIN3-like protein 1
bdi-r.1	100838409	VIN3-like protein 1
tae-r.2	123119840	VIN3-like protein 1
tae-r.2	123111587	VIN3-like protein 1
tae-r.2	123102649	VIN3-like protein 1
hvu-r.1	123398334	VIN3-like protein 1
hvu-r.1	123424733	VIN3-like protein 1
osa-u.5	4337793	VIN3-like protein 1
osa-u.5	4352406	VIN3-like protein 1
zma-u.5	103650592	VIN3-like protein 1
zma-u.5	100280056	VIN3-like protein 1
zma-u.5	103641378	VIN3-like protein 1
sbi-r.1	8075961	VIN3-like protein 1
sbi-r.1	8064630	VIN3-like protein 1
ath-u.5	VRN5	Fibronectin type III domain-containing protein
gma-u.5	100816714	VIN3-like protein 1
gma-u.5	100816128	VIN3-like protein 1
gma-u.5	100815645	VIN3-like protein 1
sly-u.5	101268103	VIN3-like protein 1
bra-r.6	103828637	VIN3-like protein 1
vvi-u.5	100256041	VIN3-like protein 1
vvi-u.5	100259403	VIN3-like protein 1
ppo-u.5	112323247	VIN3-like protein 1
ppo-u.5	7476260	VIN3-like protein 1
mtr-u.5	25496889	VIN3-like protein 1
ghi-r.1	107907232	VIN3-like protein 1
ghi-r.1	107942294	VIN3-like protein 1
bna-r.1	106418687	VIN3-like protein 1
bna-r.1	106345944	VIN3-like protein 1
sot-r.1	102593387	VIN3-like protein 1
cit-r.1	102622056	VIN3-like protein 1
nta-r.1	107804058	VIN3-like protein 1
nta-r.1	107777324	VIN3-like protein 1

Annotation

functional annotation

KEGG

GO BP

GO:0010048 [list] [network] vernalization response	(5 genes)	IEA
GO:0040029 [list] [network] epigenetic regulation of gene expression	(35 genes)	IEA

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(4040 genes)

IEA

Protein

XP_014754453.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 3, cyto 1, mito 1, nucl_plas 1

(predict for XP_014754453.1)

Subcellular
localization
TargetP

other 6

(predict for XP_014754453.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100831951	bdi-r.1 for 100838409	tae-r.2 for 123119840	tae-r.2 for 123111587	tae-r.2 for 123102649	hvu-r.1 for 123398334	hvu-r.1 for 123424733	osa-u.5 for 4337793	osa-u.5 for 4352406	zma-u.5 for 103650592	zma-u.5 for 100280056	zma-u.5 for 103641378	sbi-r.1 for 8075961	sbi-r.1 for 8064630	ath-u.5 for VRN5	gma-u.5 for 100816714	gma-u.5 for 100816128	gma-u.5 for 100815645	sly-u.5 for 101268103	bra-r.6 for 103828637	vvi-u.5 for 100256041	vvi-u.5 for 100259403	ppo-u.5 for 112323247	ppo-u.5 for 7476260	mtr-u.5 for 25496889	ghi-r.1 for 107907232	ghi-r.1 for 107942294	bna-r.1 for 106418687	bna-r.1 for 106345944	sot-r.1 for 102593387	cit-r.1 for 102622056	nta-r.1 for 107804058	nta-r.1 for 107777324

Ortholog

Ortholog ID: 5317

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

VRN5

Function^*

VIN3-like protein 1

Fibronectin type III domain-containing protein

VIN3-like protein 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	5
hvu04144	Endocytosis	3
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00051	Fructose and mannose metabolism	2
hvu00541	Biosynthesis of various nucleotide sugars	2
hvu01250	Biosynthesis of nucleotide sugars	2
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	2
osa02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01250	Biosynthesis of nucleotide sugars	5
vvi00520	Amino sugar and nucleotide sugar metabolism	4
vvi00541	Biosynthesis of various nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00511	Other glycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	4
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00541	Biosynthesis of various nucleotide sugars	9
ghi01250	Biosynthesis of nucleotide sugars	9
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00541	Biosynthesis of various nucleotide sugars	9
ghi01250	Biosynthesis of nucleotide sugars	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03250	Viral life cycle - HIV-1	2
cit03272	Virion - Hepatitis viruses	2
cit04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	2
nta04626	Plant-pathogen interaction	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	2
nta04016	MAPK signaling pathway - plant	2
nta04626	Plant-pathogen interaction	2
nta04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

100831951

100838409

123111587

100127083

123180423

123398334

123424733

4337793

4352406

103650592

100280056

103641378

8075961

8064630

822034

100816714

100816128

100815645

101268103

103828637

100256041

100259403

112323247

7476260

25496889

107907232

107942294

106418687

106345944

102593387

102622056

107804058

107777324

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100831951 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100831951 (bdi-r.1 coexpression data)


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	3	2	2	3	2	1	3	1	1	2	2	1	2	2	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100831951 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100831951 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**