ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100833923	protein PHOSPHATE STARVATION RESPONSE 1
bdi-r.1	100821897	protein PHOSPHATE STARVATION RESPONSE 2
tae-r.2	123060361	protein PHOSPHATE STARVATION RESPONSE 2
tae-r.2	123068891	protein PHOSPHATE STARVATION RESPONSE 2
tae-r.2	123077417	protein PHOSPHATE STARVATION RESPONSE 2
hvu-r.1	123448735	protein PHOSPHATE STARVATION RESPONSE 1-like
hvu-r.1	123442891	protein PHOSPHATE STARVATION RESPONSE 2-like
osa-u.5	PHR2	protein PHOSPHATE STARVATION RESPONSE 2-like
osa-u.5	4332726	protein PHOSPHATE STARVATION RESPONSE 1-like
zma-u.5	100285165	uncharacterized LOC100285165
zma-u.5	100382084	uncharacterized LOC100382084
sbi-r.1	110431636	protein PHOSPHATE STARVATION RESPONSE 1-like
sbi-r.1	110432823	protein PHOSPHATE STARVATION RESPONSE 2-like
ath-u.5	AT3G04450	Homeodomain-like superfamily protein
ath-u.5	PHR1	phosphate starvation response 1
ath-u.5	PHL1	Homeodomain-like superfamily protein
gma-u.5	PHR9	MYB-CC domain-containing transcription factor PHR9
gma-u.5	PHR22	MYB-CC domain-containing transcription factor PHR22
gma-u.5	PHR10	MYB-CC domain-containing transcription factor PHR10
sly-u.5	101263818	protein PHOSPHATE STARVATION RESPONSE 1
sly-u.5	101257079	protein PHR1-LIKE 1
sly-u.5	101245990	protein PHOSPHATE STARVATION RESPONSE 1-like
bra-r.6	103854619	protein PHR1-LIKE 1
bra-r.6	103834747	protein PHOSPHATE STARVATION RESPONSE 1
bra-r.6	103848918	myb family transcription factor PHL13
vvi-u.5	100240786	protein PHOSPHATE STARVATION RESPONSE 1
vvi-u.5	100244545	protein PHOSPHATE STARVATION RESPONSE 1
ppo-u.5	7459549	protein PHOSPHATE STARVATION RESPONSE 1
ppo-u.5	7465946	protein PHR1-LIKE 1
ppo-u.5	7474630	protein PHR1-LIKE 1
mtr-u.5	11430828	protein PHOSPHATE STARVATION RESPONSE 1
mtr-u.5	25499705	protein PHR1-LIKE 1
mtr-u.5	11411041	protein PHR1-LIKE 1
ghi-r.1	107923996	protein PHOSPHATE STARVATION RESPONSE 1
ghi-r.1	107924015	protein PHOSPHATE STARVATION RESPONSE 1
ghi-r.1	107892633	protein PHR1-LIKE 1
bna-r.1	111197722	protein PHOSPHATE STARVATION RESPONSE 1
bna-r.1	111211533	protein PHR1-LIKE 1-like
bna-r.1	125574933	myb family transcription factor PHL13-like
sot-r.1	102589864	protein PHR1-LIKE 1-like
sot-r.1	102603671	protein PHR1-LIKE 1-like
sot-r.1	102597897	protein PHR1-LIKE 1-like
cit-r.1	102622820	protein PHR1-LIKE 1
cit-r.1	102620365	protein PHOSPHATE STARVATION RESPONSE 1
nta-r.1	107762626	protein PHR1-LIKE 1-like
nta-r.1	107817759	protein PHOSPHATE STARVATION RESPONSE 1
nta-r.1	107817005	protein PHOSPHATE STARVATION RESPONSE 1

Top 50 coexpressed genes to 100833923 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100833923 (bdi-r.1 coexpression data)

CoexMap"100833923"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003700 [list] [network] DNA-binding transcription factor activity	(1057 genes)	IEA
GO:0003677 [list] [network] DNA binding	(1744 genes)	IEA

Protein

XP_010228678.1 [sequence] [blastp]
XP_024312499.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, chlo 4, mito 1	(predict for XP_010228678.1)
nucl 5, chlo 4, mito 1	(predict for XP_024312499.1)

Subcellular
localization
TargetP

chlo 7, mito 3	(predict for XP_010228678.1)
chlo 7, mito 3	(predict for XP_024312499.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100833923	bdi-r.1 for 100821897	tae-r.2 for 123060361	tae-r.2 for 123068891	tae-r.2 for 123077417	hvu-r.1 for 123448735	hvu-r.1 for 123442891	osa-u.5 for PHR2	osa-u.5 for 4332726	zma-u.5 for 100285165	zma-u.5 for 100382084	sbi-r.1 for 110431636	sbi-r.1 for 110432823	ath-u.5 for AT3G04450	ath-u.5 for PHR1	ath-u.5 for PHL1	gma-u.5 for PHR9	gma-u.5 for PHR22	gma-u.5 for PHR10	sly-u.5 for 101263818	sly-u.5 for 101257079	sly-u.5 for 101245990	bra-r.6 for 103854619	bra-r.6 for 103834747	bra-r.6 for 103848918	vvi-u.5 for 100240786	vvi-u.5 for 100244545	ppo-u.5 for 7459549	ppo-u.5 for 7465946	ppo-u.5 for 7474630	mtr-u.5 for 11430828	mtr-u.5 for 25499705	mtr-u.5 for 11411041	ghi-r.1 for 107923996	ghi-r.1 for 107924015	ghi-r.1 for 107892633	bna-r.1 for 111197722	bna-r.1 for 111211533	bna-r.1 for 125574933	sot-r.1 for 102589864	sot-r.1 for 102603671	sot-r.1 for 102597897	cit-r.1 for 102622820	cit-r.1 for 102620365	nta-r.1 for 107762626	nta-r.1 for 107817759	nta-r.1 for 107817005

Ortholog

Ortholog ID: 1797

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

PHR2

PHR1

PHL1

PHR17

PHR32

PHR33

Function^*

protein PHOSPHATE STARVATION RESPONSE 1

protein PHOSPHATE STARVATION RESPONSE 2

protein PHOSPHATE STARVATION RESPONSE 1

protein PHOSPHATE STARVATION RESPONSE 1-like

protein PHOSPHATE STARVATION RESPONSE 2-like

protein PHOSPHATE STARVATION RESPONSE 1-like

uncharacterized LOC100285165

uncharacterized LOC100382084

protein PHOSPHATE STARVATION RESPONSE 1-like

protein PHOSPHATE STARVATION RESPONSE 2-like

Homeodomain-like superfamily protein

phosphate starvation response 1

Homeodomain-like superfamily protein

MYB-CC domain-containing transcription factor PHR17

MYB-CC domain-containing transcription factor PHR32

MYB-CC domain-containing transcription factor PHR33

protein PHR1-LIKE 1

protein PHOSPHATE STARVATION RESPONSE 1-like

protein PHR1-LIKE 1

protein PHOSPHATE STARVATION RESPONSE 1

protein PHR1-LIKE 1

protein PHOSPHATE STARVATION RESPONSE 1

protein PHR1-LIKE 1

protein PHOSPHATE STARVATION RESPONSE 1

protein PHR1-LIKE 1

protein PHOSPHATE STARVATION RESPONSE 1

protein PHR1-LIKE 1

protein PHR1-LIKE 1-like

myb family transcription factor PHL13-like

protein PHR1-LIKE 1-like

protein PHR1-LIKE 1

protein PHOSPHATE STARVATION RESPONSE 1

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	3
tae04814	Motor proteins	3
tae00760	Nicotinate and nicotinamide metabolism	2
tae01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	3
hvu04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	5
zma04120	Ubiquitin mediated proteolysis	3
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00910	Nitrogen metabolism	2
ath01310	Nitrogen cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	2
gma00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3
gma00073	Cutin, suberine and wax biosynthesis	2
gma00230	Purine metabolism	2
gma01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00860	Porphyrin metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	3
sly03013	Nucleocytoplasmic transport	2
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo03410	Base excision repair	2
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00280	Valine, leucine and isoleucine degradation	3
ppo00620	Pyruvate metabolism	3
ppo00071	Fatty acid degradation	2
ppo00410	beta-Alanine metabolism	2
ppo01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04016	MAPK signaling pathway - plant	3
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00071	Fatty acid degradation	4
ghi00410	beta-Alanine metabolism	4
ghi00592	alpha-Linolenic acid metabolism	4
ghi00640	Propanoate metabolism	4
ghi01040	Biosynthesis of unsaturated fatty acids	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03250	Viral life cycle - HIV-1	2
sot03272	Virion - Hepatitis viruses	2
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	6
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2
nta00970	Aminoacyl-tRNA biosynthesis	2
nta03008	Ribosome biogenesis in eukaryotes	2

Expression

Expression pattern

Entrez Gene ID^*

100833923

100821897

123060361

123077417

100873125

123448735

123442891

4343086

4332726

100285165

100382084

110431636

110432823

819601

828979

833026

100808743

100810560

100813604

101257079

101245990

103854619

103834747

103837308

100240786

100244545

7459549

7465946

7474630

11430828

25499705

11411041

107923996

107924015

107892633

111211533

125574933

106367759

102603671

102597897

102588550

102622820

102620365

107817759

107817005

107812741

The preparation time of this page was 0.2 [sec].


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	3	2	2	2	2	3	3	3	3	2	3	3	3	3	3	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100833923 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100833923 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**