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Orthologous genes in OrthoFinder**

Species Gene Description
 bdi-r.1   100833963   pentatricopeptide repeat-containing protein At4g20740 
 tae-r.2   123104119   pentatricopeptide repeat-containing protein At4g20740 
 hvu-r.1   123430040   pentatricopeptide repeat-containing protein At4g20740 
 osa-u.5   4342554   pentatricopeptide repeat-containing protein At4g20740 
 zma-u.5   103632011   pentatricopeptide repeat-containing protein At4g20740 
 sbi-r.1   8060734   pentatricopeptide repeat-containing protein At4g20740 
 ath-u.5   EMB3131   Pentatricopeptide repeat (PPR-like) superfamily protein 
 gma-u.5   102662754   pentatricopeptide repeat-containing protein At4g20740 
 gma-u.5   121174284   pentatricopeptide repeat-containing protein At4g20740-like 
 gma-u.5   100788816   pentatricopeptide repeat-containing protein At4g20740 
 sly-u.5   101245985   pentatricopeptide repeat-containing protein 
 bra-r.6   103858343   pentatricopeptide repeat-containing protein At4g20740 
 vvi-u.5   100251773   pentatricopeptide repeat-containing protein At4g20740 
 ppo-u.5   7460213   pentatricopeptide repeat-containing protein At4g20740 
 mtr-u.5   11444480   pentatricopeptide repeat-containing protein At4g20740 
 ghi-r.1   107900572   pentatricopeptide repeat-containing protein At4g20740 
 ghi-r.1   107962094   pentatricopeptide repeat-containing protein At4g20740 
 bna-r.1   111211642   pentatricopeptide repeat-containing protein At4g20740 
 bna-r.1   106425591   pentatricopeptide repeat-containing protein At4g20740 
 sot-r.1   102591649   pentatricopeptide repeat-containing protein At4g20740 
 cit-r.1   102617298   pentatricopeptide repeat-containing protein At4g20740 
 nta-r.1   107800251   pentatricopeptide repeat-containing protein At4g20740-like 
 nta-r.1   107770023   pentatricopeptide repeat-containing protein At4g20740 

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Top 50 coexpressed genes to 100833963 (bdi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100833963 (bdi-r.1 coexpression data)

CoexMap"100833963"


bdiLOC100833963 | Entrez gene ID : 100833963      
Species bdi tae hvu osa zma sbi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 1 1 1 1 1 1 3 1 1 1 1 1 2 2 1 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4040 genes)  IEA  
Protein XP_003561352.1 [sequence] [blastp]
XP_010228290.1 [sequence] [blastp]
XP_024313353.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 5,  cyto_mito 3,  chlo 3,  nucl 1  (predict for XP_003561352.1)
mito 5,  cyto_mito 3,  chlo 3,  nucl 1  (predict for XP_010228290.1)
mito 5,  cyto_mito 3,  chlo 3,  nucl 1  (predict for XP_024313353.1)
Subcellular
localization
TargetP
chlo 5,  other 3  (predict for XP_003561352.1)
chlo 5,  other 3  (predict for XP_010228290.1)
chlo 5,  other 3  (predict for XP_024313353.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bdi-r.1
for
100833963
tae-r.2
for
123104119
hvu-r.1
for
123430040
osa-u.5
for
4342554
zma-u.5
for
103632011
sbi-r.1
for
8060734
ath-u.5
for
EMB3131
gma-u.5
for
102662754
gma-u.5
for
121174284
gma-u.5
for
100788816
sly-u.5
for
101245985
bra-r.6
for
103858343
vvi-u.5
for
100251773
ppo-u.5
for
7460213
mtr-u.5
for
11444480
ghi-r.1
for
107900572
ghi-r.1
for
107962094
bna-r.1
for
111211642
bna-r.1
for
106425591
sot-r.1
for
102591649
cit-r.1
for
102617298
nta-r.1
for
107800251
nta-r.1
for
107770023


Ortholog ID: 9029
Species bdi tae tae hvu osa zma sbi ath gma gma gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta
Symbol LOC100833963 LOC123104119 LOC123044013 LOC123430040 LOC4342554 LOC103632011 LOC8060734 EMB3131 LOC102662754 LOC121174284 LOC100788816 LOC101245985 LOC103858343 LOC100251773 LOC7460213 LOC11444480 LOC107900572 LOC107962094 LOC111211642 LOC106425591 LOC102591649 LOC102617298 LOC107800251 LOC107770023
Function* pentatricopeptide repeat-containing protein At4g20740 pentatricopeptide repeat-containing protein At4g20740 pentatricopeptide repeat-containing protein At4g20740 pentatricopeptide repeat-containing protein At4g20740 pentatricopeptide repeat-containing protein At4g20740 pentatricopeptide repeat-containing protein At4g20740 pentatricopeptide repeat-containing protein At4g20740 Pentatricopeptide repeat (PPR-like) superfamily protein pentatricopeptide repeat-containing protein At4g20740 pentatricopeptide repeat-containing protein At4g20740-like pentatricopeptide repeat-containing protein At4g20740 pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At4g20740 pentatricopeptide repeat-containing protein At4g20740 pentatricopeptide repeat-containing protein At4g20740 pentatricopeptide repeat-containing protein At4g20740 pentatricopeptide repeat-containing protein At4g20740 pentatricopeptide repeat-containing protein At4g20740 pentatricopeptide repeat-containing protein At4g20740 pentatricopeptide repeat-containing protein At4g20740 pentatricopeptide repeat-containing protein At4g20740 pentatricopeptide repeat-containing protein At4g20740 pentatricopeptide repeat-containing protein At4g20740-like pentatricopeptide repeat-containing protein At4g20740
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 3
gma00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
vvi03013 Nucleocytoplasmic transport 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 2
ghi04148 Efferocytosis 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi03040 Spliceosome 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00270 Cysteine and methionine metabolism 2
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100833963 123104119 123044013 123430040 4342554 103632011 8060734 827823 102662754 121174284 100788816 101245985 103858343 100251773 7460213 11444480 107900572 107962094 111211642 106425591 102591649 102617298 107800251 107770023
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