ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bdi-r.1	100834480	RNA polymerase II C-terminal domain phosphatase-like 2
bdi-r.1	100832517	RNA polymerase II C-terminal domain phosphatase-like 1
bdi-r.1	100827987	RNA polymerase II C-terminal domain phosphatase-like 1
tae-r.2	123071472	RNA polymerase II C-terminal domain phosphatase-like 2
tae-r.2	123062651	RNA polymerase II C-terminal domain phosphatase-like 2
tae-r.2	123053928	RNA polymerase II C-terminal domain phosphatase-like 1
hvu-r.1	123404656	RNA polymerase II C-terminal domain phosphatase-like 1
hvu-r.1	123444856	RNA polymerase II C-terminal domain phosphatase-like 2
hvu-r.1	123427316	RNA polymerase II C-terminal domain phosphatase-like 1
osa-u.5	4324753	RNA polymerase II C-terminal domain phosphatase-like 2
osa-u.5	4330100	RNA polymerase II C-terminal domain phosphatase-like 1
osa-u.5	4336474	RNA polymerase II C-terminal domain phosphatase-like 1
zma-u.5	100304282	RNA polymerase II C-terminal domain phosphatase-like 1
zma-u.5	100383723	uncharacterized LOC100383723
zma-u.5	100382420	RNA polymerase II C-terminal domain phosphatase-like 2
sbi-r.1	8074805	RNA polymerase II C-terminal domain phosphatase-like 1
sbi-r.1	8082870	RNA polymerase II C-terminal domain phosphatase-like 1
sbi-r.1	8060121	RNA polymerase II C-terminal domain phosphatase-like 2
ath-u.5	CPL1	C-terminal domain phosphatase-like 1
ath-u.5	CPL2	carboxyl-terminal domain (ctd) phosphatase-like 2
gma-u.5	100811605	RNA polymerase II C-terminal domain phosphatase-like 2
gma-u.5	100789209	RNA polymerase II C-terminal domain phosphatase-like 1
gma-u.5	100777842	RNA polymerase II C-terminal domain phosphatase-like 2
sly-u.5	101266384	RNA polymerase II C-terminal domain phosphatase-like 1
sly-u.5	101250435	RNA polymerase II C-terminal domain phosphatase-like 2
bra-r.6	117131526	RNA polymerase II C-terminal domain phosphatase-like 2
bra-r.6	103855429	RNA polymerase II C-terminal domain phosphatase-like 2
vvi-u.5	100255024	RNA polymerase II C-terminal domain phosphatase-like 1
vvi-u.5	100249491	RNA polymerase II C-terminal domain phosphatase-like 2
ppo-u.5	18102993	RNA polymerase II C-terminal domain phosphatase-like 1
ppo-u.5	7490819	RNA polymerase II C-terminal domain phosphatase-like 1
ppo-u.5	18106307	RNA polymerase II C-terminal domain phosphatase-like 2
mtr-u.5	11413506	RNA polymerase II C-terminal domain phosphatase-like 2
mtr-u.5	25493191	RNA polymerase II C-terminal domain phosphatase-like 1
ghi-r.1	107958070	RNA polymerase II C-terminal domain phosphatase-like 2
ghi-r.1	107960205	RNA polymerase II C-terminal domain phosphatase-like 1
ghi-r.1	121230898	RNA polymerase II C-terminal domain phosphatase-like 1
bna-r.1	125575187	RNA polymerase II C-terminal domain phosphatase-like 1
bna-r.1	106376951	RNA polymerase II C-terminal domain phosphatase-like 1
sot-r.1	102601373	RNA polymerase II C-terminal domain phosphatase-like 1
sot-r.1	102586478	RNA polymerase II C-terminal domain phosphatase-like 2
cit-r.1	102624417	RNA polymerase II C-terminal domain phosphatase-like 2
cit-r.1	102611823	RNA polymerase II C-terminal domain phosphatase-like 1
nta-r.1	107801902	RNA polymerase II C-terminal domain phosphatase-like 2
nta-r.1	107766631	RNA polymerase II C-terminal domain phosphatase-like 1
nta-r.1	107812197	RNA polymerase II C-terminal domain phosphatase-like 1
cre-r.1	CHLRE_06g280500v5	uncharacterized protein

Top 50 coexpressed genes to 100834480 (bdi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100834480 (bdi-r.1 coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

RNA polymerase II C-terminal domain phosphatase-like 2

KEGG

GO BP

GO CC

GO MF

GO:0008420 [list] [network] RNA polymerase II CTD heptapeptide repeat phosphatase activity

(9 genes)

IEA

Protein

XP_014754926.1 [sequence] [blastp]
XP_024314395.1 [sequence] [blastp]
XP_024314396.1 [sequence] [blastp]
XP_024314397.1 [sequence] [blastp]
XP_024314398.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 10	(predict for XP_014754926.1)
chlo 9, E.R. 1, pero 1	(predict for XP_024314395.1)
chlo 9, vacu 1, pero 1	(predict for XP_024314396.1)
chlo 10	(predict for XP_024314397.1)
chlo 10	(predict for XP_024314398.1)

Subcellular
localization
TargetP

mito 5	(predict for XP_014754926.1)
mito 5	(predict for XP_024314395.1)
mito 5	(predict for XP_024314396.1)
mito 5	(predict for XP_024314397.1)
mito 5	(predict for XP_024314398.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bdi-r.1 for 100834480	bdi-r.1 for 100832517	bdi-r.1 for 100827987	tae-r.2 for 123071472	tae-r.2 for 123062651	tae-r.2 for 123053928	hvu-r.1 for 123404656	hvu-r.1 for 123444856	hvu-r.1 for 123427316	osa-u.5 for 4324753	osa-u.5 for 4330100	osa-u.5 for 4336474	zma-u.5 for 100304282	zma-u.5 for 100383723	zma-u.5 for 100382420	sbi-r.1 for 8074805	sbi-r.1 for 8082870	sbi-r.1 for 8060121	ath-u.5 for CPL1	ath-u.5 for CPL2	gma-u.5 for 100811605	gma-u.5 for 100789209	gma-u.5 for 100777842	sly-u.5 for 101266384	sly-u.5 for 101250435	bra-r.6 for 117131526	bra-r.6 for 103855429	vvi-u.5 for 100255024	vvi-u.5 for 100249491	ppo-u.5 for 18102993	ppo-u.5 for 7490819	ppo-u.5 for 18106307	mtr-u.5 for 11413506	mtr-u.5 for 25493191	ghi-r.1 for 107958070	ghi-r.1 for 107960205	ghi-r.1 for 121230898	bna-r.1 for 125575187	bna-r.1 for 106376951	sot-r.1 for 102601373	sot-r.1 for 102586478	cit-r.1 for 102624417	cit-r.1 for 102611823	nta-r.1 for 107801902	nta-r.1 for 107766631	nta-r.1 for 107812197	cre-r.1 for CHLRE_06g280500v5

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Ortholog

Ortholog ID: 1761

Species

bdi

tae

hvu

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

CPL1

CPL2

Function^*

RNA polymerase II C-terminal domain phosphatase-like 1

RNA polymerase II C-terminal domain phosphatase-like 2

RNA polymerase II C-terminal domain phosphatase-like 1

RNA polymerase II C-terminal domain phosphatase-like 2

RNA polymerase II C-terminal domain phosphatase-like 1

uncharacterized LOC109942457

RNA polymerase II C-terminal domain phosphatase-like 1

RNA polymerase II C-terminal domain phosphatase-like 2

C-terminal domain phosphatase-like 1

carboxyl-terminal domain (ctd) phosphatase-like 2

RNA polymerase II C-terminal domain phosphatase-like 2

RNA polymerase II C-terminal domain phosphatase-like 1

RNA polymerase II C-terminal domain phosphatase-like 2

RNA polymerase II C-terminal domain phosphatase-like 1

RNA polymerase II C-terminal domain phosphatase-like 2

RNA polymerase II C-terminal domain phosphatase-like 1

RNA polymerase II C-terminal domain phosphatase-like 2

RNA polymerase II C-terminal domain phosphatase-like 1

RNA polymerase II C-terminal domain phosphatase-like 2

RNA polymerase II C-terminal domain phosphatase-like 1

RNA polymerase II C-terminal domain phosphatase-like 2

RNA polymerase II C-terminal domain phosphatase-like 1

RNA polymerase II C-terminal domain phosphatase-like 2

RNA polymerase II C-terminal domain phosphatase-like 1

RNA polymerase II C-terminal domain phosphatase-like 2

RNA polymerase II C-terminal domain phosphatase-like 1

RNA polymerase II C-terminal domain phosphatase-like 2

RNA polymerase II C-terminal domain phosphatase-like 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	3
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	5
tae03013	Nucleocytoplasmic transport	3
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00790	Folate biosynthesis	2
osa01240	Biosynthesis of cofactors	2
osa04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	3
sbi04142	Lysosome	2
sbi04144	Endocytosis	2
sbi05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	5
ath03015	mRNA surveillance pathway	3
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03083	Polycomb repressive complex	2
sly03250	Viral life cycle - HIV-1	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	3
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	3
ghi03013	Nucleocytoplasmic transport	2
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03083	Polycomb repressive complex	2
ghi00270	Cysteine and methionine metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	3
ghi03013	Nucleocytoplasmic transport	2
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	4
bna03008	Ribosome biogenesis in eukaryotes	3
bna03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	2
nta00600	Sphingolipid metabolism	2
nta03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00600	Sphingolipid metabolism	2
nta03082	ATP-dependent chromatin remodeling	2
nta03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00600	Sphingolipid metabolism	2
nta03082	ATP-dependent chromatin remodeling	2
nta03022	Basal transcription factors	2

Expression

Expression pattern

Entrez Gene ID^*

100832517

100827987

123127831

123137597

123189821

123404656

123444856

123427316

4324753

4330100

4336474

100304282

109942457

103637577

8074805

8082870

8060121

828254

831743

100811605

100777842

100819722

101266384

101250435

117131526

103855429

103834180

100255024

100249491

18102993

7490819

18106307

11413506

25493191

107958070

121230898

107891542

125575187

106433824

102601373

102586478

102624417

102611823

107801902

107766631

107812197

5720910

The preparation time of this page was 0.5 [sec].


Species	bdi	tae	hvu	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	3	3	3	3	3	2	3	2	2	2	3	2	3	2	2	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100834480 (bdi-r.1 coexpression data)

Top 50 enrichment test to 100834480 (bdi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**