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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   CPL1   C-terminal domain phosphatase-like 1 
 ath-r.7   CPL1   C-terminal domain phosphatase-like 1 
 ath-e.2   CPL1   C-terminal domain phosphatase-like 1 
 ath-u.5   CPL2   carboxyl-terminal domain (ctd) phosphatase-like 2 
 bra-r.6   117131526   RNA polymerase II C-terminal domain phosphatase-like 2 
 bra-r.6   103834180   RNA polymerase II C-terminal domain phosphatase-like 1 
 bna-r.1   106376951   RNA polymerase II C-terminal domain phosphatase-like 1 
 bna-r.1   125575187   RNA polymerase II C-terminal domain phosphatase-like 1 
 ghi-r.1   107958070   RNA polymerase II C-terminal domain phosphatase-like 2 
 ghi-r.1   107960205   RNA polymerase II C-terminal domain phosphatase-like 1 
 ghi-r.1   107937767   RNA polymerase II C-terminal domain phosphatase-like 1 
 cit-r.1   102624417   RNA polymerase II C-terminal domain phosphatase-like 2 
 cit-r.1   102611823   RNA polymerase II C-terminal domain phosphatase-like 1 
 gma-u.5   100811605   RNA polymerase II C-terminal domain phosphatase-like 2 
 gma-u.5   100789209   RNA polymerase II C-terminal domain phosphatase-like 1 
 gma-u.5   100777842   RNA polymerase II C-terminal domain phosphatase-like 2 
 vvi-u.5   100255024   RNA polymerase II C-terminal domain phosphatase-like 1 
 vvi-u.5   100249491   RNA polymerase II C-terminal domain phosphatase-like 2 
 ppo-u.5   18102993   RNA polymerase II C-terminal domain phosphatase-like 1 
 ppo-u.5   7490819   RNA polymerase II C-terminal domain phosphatase-like 1 
 ppo-u.5   18106307   RNA polymerase II C-terminal domain phosphatase-like 2 
 mtr-u.5   11413506   RNA polymerase II C-terminal domain phosphatase-like 2 
 mtr-u.5   25493191   RNA polymerase II C-terminal domain phosphatase-like 1 
 sly-u.5   101266384   RNA polymerase II C-terminal domain phosphatase-like 1 
 sly-u.5   101250435   RNA polymerase II C-terminal domain phosphatase-like 2 
 sot-r.1   102601373   RNA polymerase II C-terminal domain phosphatase-like 1 
 sot-r.1   102586478   RNA polymerase II C-terminal domain phosphatase-like 2 
 nta-r.1   107831725   RNA polymerase II C-terminal domain phosphatase-like 2 
 nta-r.1   107812197   RNA polymerase II C-terminal domain phosphatase-like 1 
 nta-r.1   107801902   RNA polymerase II C-terminal domain phosphatase-like 2 
 osa-u.5   4324753   RNA polymerase II C-terminal domain phosphatase-like 2 
 osa-u.5   4330100   RNA polymerase II C-terminal domain phosphatase-like 1 
 osa-u.5   4336474   RNA polymerase II C-terminal domain phosphatase-like 1 
 zma-u.5   103637577   RNA polymerase II C-terminal domain phosphatase-like 1 
 zma-u.5   100383723   uncharacterized LOC100383723 
 zma-u.5   100304282   RNA polymerase II C-terminal domain phosphatase-like 1 
 tae-r.2   123079808   RNA polymerase II C-terminal domain phosphatase-like 2 
 tae-r.2   123046046   RNA polymerase II C-terminal domain phosphatase-like 1 
 tae-r.2   123053928   RNA polymerase II C-terminal domain phosphatase-like 1 
 hvu-r.1   123427316   RNA polymerase II C-terminal domain phosphatase-like 1 
 hvu-r.1   123444856   RNA polymerase II C-terminal domain phosphatase-like 2 
 hvu-r.1   123404656   RNA polymerase II C-terminal domain phosphatase-like 1 
 sbi-r.1   8082870   RNA polymerase II C-terminal domain phosphatase-like 1 
 sbi-r.1   8074805   RNA polymerase II C-terminal domain phosphatase-like 1 
 sbi-r.1   8060121   RNA polymerase II C-terminal domain phosphatase-like 2 
 bdi-r.1   100827987   RNA polymerase II C-terminal domain phosphatase-like 1 
 bdi-r.1   100832517   RNA polymerase II C-terminal domain phosphatase-like 1 
 bdi-r.1   100834480   RNA polymerase II C-terminal domain phosphatase-like 2 
 cre-r.1   CHLRE_06g280500v5   uncharacterized protein 

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Top 50 coexpressed genes to CPL1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CPL1 (ath-u.5 coexpression data)

CoexMap""


athCPL1 | Entrez gene ID : 828254      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 2 3 2 3 2 3 2 2 2 3 3 3 3 3 3 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
Function C-terminal domain phosphatase-like 1
KEGG
GO BP
GO:0009738 [list] [network] abscisic acid-activated signaling pathway  (111 genes)  IMP  
GO:0045892 [list] [network] negative regulation of DNA-templated transcription  (200 genes)  IMP  
GO:0009611 [list] [network] response to wounding  (271 genes)  IMP  
GO:0009651 [list] [network] response to salt stress  (473 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0004721 [list] [network] phosphoprotein phosphatase activity  (71 genes)  IDA  
GO:0016791 [list] [network] phosphatase activity  (199 genes)  IDA  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IPI  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_193898.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1  (predict for NP_193898.3)
Subcellular
localization
TargetP
other 8  (predict for NP_193898.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
CPL1
ath-r.7
for
CPL1
ath-e.2
for
CPL1
ath-u.5
for
CPL2
bra-r.6
for
117131526
bra-r.6
for
103834180
bna-r.1
for
106376951
bna-r.1
for
125575187
ghi-r.1
for
107958070
ghi-r.1
for
107960205
ghi-r.1
for
107937767
cit-r.1
for
102624417
cit-r.1
for
102611823
gma-u.5
for
100811605
gma-u.5
for
100789209
gma-u.5
for
100777842
vvi-u.5
for
100255024
vvi-u.5
for
100249491
ppo-u.5
for
18102993
ppo-u.5
for
7490819
ppo-u.5
for
18106307
mtr-u.5
for
11413506
mtr-u.5
for
25493191
sly-u.5
for
101266384
sly-u.5
for
101250435
sot-r.1
for
102601373
sot-r.1
for
102586478
nta-r.1
for
107831725
nta-r.1
for
107812197
nta-r.1
for
107801902
osa-u.5
for
4324753
osa-u.5
for
4330100
osa-u.5
for
4336474
zma-u.5
for
103637577
zma-u.5
for
100383723
zma-u.5
for
100304282
tae-r.2
for
123079808
tae-r.2
for
123046046
tae-r.2
for
123053928
hvu-r.1
for
123427316
hvu-r.1
for
123444856
hvu-r.1
for
123404656
sbi-r.1
for
8082870
sbi-r.1
for
8074805
sbi-r.1
for
8060121
bdi-r.1
for
100827987
bdi-r.1
for
100832517
bdi-r.1
for
100834480
cre-r.1
for
CHLRE_06g280500v5

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Ortholog ID: 1761
Species ath ath bra bra bra bna bna ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi cre
Symbol CPL1 CPL2 LOC117131526 LOC103834180 LOC103855429 LOC125575187 LOC106433824 LOC107958070 LOC107891542 LOC121230898 LOC102624417 LOC102611823 LOC100811605 LOC100777842 LOC100819722 LOC100255024 LOC100249491 LOC18102993 LOC7490819 LOC18106307 LOC11413506 LOC25493191 LOC101266384 LOC101250435 LOC102601373 LOC102586478 LOC107812197 LOC107801902 LOC107766631 LOC4324753 LOC4330100 LOC4336474 LOC103637577 LOC100304282 LOC109942457 LOC123127831 LOC123189821 LOC123137597 LOC123427316 LOC123444856 LOC123404656 LOC8082870 LOC8074805 LOC8060121 LOC100827987 LOC100832517 CHLRE_06g280500v5
Function* C-terminal domain phosphatase-like 1 carboxyl-terminal domain (ctd) phosphatase-like 2 RNA polymerase II C-terminal domain phosphatase-like 2 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 2 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 2 RNA polymerase II C-terminal domain phosphatase-like 2 RNA polymerase II C-terminal domain phosphatase-like 2 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 2 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 2 RNA polymerase II C-terminal domain phosphatase-like 2 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 2 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 2 RNA polymerase II C-terminal domain phosphatase-like 2 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 2 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 2 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 2 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 2 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 1 uncharacterized LOC109942457 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 2 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 2 RNA polymerase II C-terminal domain phosphatase-like 1 RNA polymerase II C-terminal domain phosphatase-like 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 5
ath03015 mRNA surveillance pathway 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 4
bna03008 Ribosome biogenesis in eukaryotes 3
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 3
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 3
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi00270 Cysteine and methionine metabolism 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 2
sly03250 Viral life cycle - HIV-1 2
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00600 Sphingolipid metabolism 2
nta03082 ATP-dependent chromatin remodeling 2
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
nta00600 Sphingolipid metabolism 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00600 Sphingolipid metabolism 2
nta03082 ATP-dependent chromatin remodeling 2
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00790 Folate biosynthesis 2
osa01240 Biosynthesis of cofactors 2
osa04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 5
tae03013 Nucleocytoplasmic transport 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
sbi04142 Lysosome 2
sbi04144 Endocytosis 2
sbi05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 3
bdi03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828254 831743 117131526 103834180 103855429 125575187 106433824 107958070 107891542 121230898 102624417 102611823 100811605 100777842 100819722 100255024 100249491 18102993 7490819 18106307 11413506 25493191 101266384 101250435 102601373 102586478 107812197 107801902 107766631 4324753 4330100 4336474 103637577 100304282 109942457 123127831 123189821 123137597 123427316 123444856 123404656 8082870 8074805 8060121 100827987 100832517 5720910
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